PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g101250.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 294aa    MW: 33905 Da    PI: 6.2104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g101250.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087153177123
                         EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                         + C+ C+k ++  ++++ H+++  H
  Sopim01g101250.0.1 153 FFCELCNKQYKLAMEFEAHLSSydH 177
                         67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.3E-1756101IPR000467G-patch domain
PROSITE profilePS5017416.73358103IPR000467G-patch domain
PfamPF015853.0E-155999IPR000467G-patch domain
PfamPF121716.3E-5153180IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280155177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MPDMRMRDRR QQEMEEADEA SVLEDLAEDF RLPINHRPTE NVDLENVEQA SLDTQLTSSN  60
IGFRLLQKMG WKGKGLGKNE QGITEPIKSG MRDPKLGIGK QEEDDFFTAE ENIQRRKLDI  120
ELEETEELAK KREVLAEREH KIETDVKEIR KTFFCELCNK QYKLAMEFEA HLSSYDHNHR  180
KRFKEMREMH GSSRDDRHKR EQQRQEREMA KFAQMAANKK QQEQQTPEEA GNIPAPSMVR  240
TATALADQDQ RKTLKFGFSA KGGSSKVTTL VNKSAKKPKV TVASVFSNES DEE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402221e-106AC240222.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-46a2 map 1, complete sequence.
GenBankHG9754401e-106HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-106HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230362.10.0G patch domain-containing protein 8
TrEMBLA0A3Q7EPG30.0A0A3Q7EPG3_SOLLC; Uncharacterized protein
STRINGSolyc01g101250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86041415