PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g100200.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 667aa MW: 75737.7 Da PI: 6.7624

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g100200.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	365.5	7.4e-112	286	657	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l+ lL++cA+a+++ d + a++lL r++e+++p+gd ++Rla+y+++AL+arl+++++ ly a +ps+ s ++ l+a+k+f ++P+ Sopim01g100200.0.1 286 LRALLTQCAQAMANYDSRTANELLMRIREHSTPHGDGTERLAHYLANALEARLSGTGTALYTAYAPSRIS---AANILKAYKAFIRACPFK 373 5789**********************************************************999998...899*********** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 +s++ aN+ I + ++g+ ++HiiDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g + ++eetg+rL+k+++++ vpf f++ Sopim01g100200.0.1 374 LLSNIFANKYIRKVIAGAPKIHIIDFGILYGFQWPCLIQGLSMRAGGPPELRITGIDLPQPGfkPAGRVEETGRRLEKYCKRFSVPFVFKA 464 *********************************************************9999********************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +ak++e+++leeL+v+++E+l+Vn+ ++l +++de+v +s+rd+vL+l+++++P+++++ + n++ F++rf eal ++s+l+d++ Sopim01g100200.0.1 465 -IAKKWESITLEELEVQRDEVLVVNSLYRLGNIPDETVVPNSPRDAVLNLIRRIRPDLFIHGALNGTFNTPFFVTRFREALFHFSSLYDMF 554 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 ea+lpre+e+r+ E+e+++r+++nv+aceg+er+er et+++W+ r +aGFk+vpl+++++k ++ +r + + ++v+e+ +++++gW Sopim01g100200.0.1 555 EATLPREDEDRKLFEEEVFARDAMNVIACEGTERVERPETYKQWQLRCVRAGFKQVPLDQEIVKIVRNKVRSEYHRDFSVDEDGHWMLQGW 645 **********************************************************************999********** PP GRAS 363 kdrpLvsvSaWr 374 k+r ++++S+W+ Sopim01g100200.0.1 646 KGRVIYALSCWK 657 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.899	260	637	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.6E-109	286	657	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MEALFQEQLF PCADSFIFRH PSIPMDPRKE VIQNGLNNHP SFDQDYFSNH VVGVGDSSPP 60 PQEEGEKDYS DAMYKFLSQM LMEEDDLENK PCMFHDCMAL QAKERYLSDV LHGSENNYSP 120 QSVIINPHDS SSFLSNYSPD SIESPQWDLN FESPASMSTL SNHDSFFTSF GNGHFEEGAV 180 NVLQSGSSSN SPTGLREKKN RHRGDVAADQ QRSNKQMATF VHDESEPLEM YDNVLLCLNN 240 PYVEQHSATS ITSYSPPNEA KKTSKVGRPR GGRKHSSIVK KEMVDLRALL TQCAQAMANY 300 DSRTANELLM RIREHSTPHG DGTERLAHYL ANALEARLSG TGTALYTAYA PSRISAANIL 360 KAYKAFIRAC PFKLLSNIFA NKYIRKVIAG APKIHIIDFG ILYGFQWPCL IQGLSMRAGG 420 PPELRITGID LPQPGFKPAG RVEETGRRLE KYCKRFSVPF VFKAIAKKWE SITLEELEVQ 480 RDEVLVVNSL YRLGNIPDET VVPNSPRDAV LNLIRRIRPD LFIHGALNGT FNTPFFVTRF 540 REALFHFSSL YDMFEATLPR EDEDRKLFEE EVFARDAMNV IACEGTERVE RPETYKQWQL 600 RCVRAGFKQV PLDQEIVKIV RNKVRSEYHR DFSVDEDGHW MLQGWKGRVI YALSCWKPTK 660 QSVKLV*

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MEALFQEQLF PCADSFIFRH PSIPMDPRKE VIQNGLNNHP SFDQDYFSNH VVGVGDSSPP  60
PQEEGEKDYS DAMYKFLSQM LMEEDDLENK PCMFHDCMAL QAKERYLSDV LHGSENNYSP  120
QSVIINPHDS SSFLSNYSPD SIESPQWDLN FESPASMSTL SNHDSFFTSF GNGHFEEGAV  180
NVLQSGSSSN SPTGLREKKN RHRGDVAADQ QRSNKQMATF VHDESEPLEM YDNVLLCLNN  240
PYVEQHSATS ITSYSPPNEA KKTSKVGRPR GGRKHSSIVK KEMVDLRALL TQCAQAMANY  300
DSRTANELLM RIREHSTPHG DGTERLAHYL ANALEARLSG TGTALYTAYA PSRISAANIL  360
KAYKAFIRAC PFKLLSNIFA NKYIRKVIAG APKIHIIDFG ILYGFQWPCL IQGLSMRAGG  420
PPELRITGID LPQPGFKPAG RVEETGRRLE KYCKRFSVPF VFKAIAKKWE SITLEELEVQ  480
RDEVLVVNSL YRLGNIPDET VVPNSPRDAV LNLIRRIRPD LFIHGALNGT FNTPFFVTRF  540
REALFHFSSL YDMFEATLPR EDEDRKLFEE EVFARDAMNV IACEGTERVE RPETYKQWQL  600
RCVRAGFKQV PLDQEIVKIV RNKVRSEYHR DFSVDEDGHW MLQGWKGRVI YALSCWKPTK  660
QSVKLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	2e-42	288	659	89	475	Protein SHORT-ROOT
5b3h_B	6e-43	288	659	35	421	Protein SHORT-ROOT
5b3h_E	6e-43	288	659	35	421	Protein SHORT-ROOT
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238503	0.0	AC238503.9 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-10f3 map 1, complete sequence.
GenBank	AC238920	0.0	AC238920.12 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-222e21 map 1, complete sequence.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234310.1	0.0	GRAS4 isoform 1
TrEMBL	Q00LP5	0.0	Q00LP5_SOLLC; GRAS4
STRING	Solyc01g100200.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein