PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g098720.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 329aa    MW: 37495.8 Da    PI: 4.9989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g098720.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.6e-15123174155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r +h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  Sopim01g098720.0.1 123 QRITHIAVERNRRKQMNDYLSVLRTLMPES---YVQRGDQASIVSGAINYVKELE 174
                         799***************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.09E-14121178No hitNo description
SuperFamilySSF474591.44E-17122191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.593122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-15122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-12123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALEAITQQQ QYLYALLGTT NWSIDSGSDY YNNNEFVPNH QNVTAPQEYE DYSNWNLPAP  60
LLVDSQNEFH QWGQNCSSVL DHNFTIVDQQ EQLESPIEMS SSTTRPRRRR TRTKKNDEEI  120
ENQRITHIAV ERNRRKQMND YLSVLRTLMP ESYVQRGDQA SIVSGAINYV KELEQQLQFL  180
SGKKHLTSQN QEANGETSPF SEFFSIPQYS TTITAAAAAT TTSENVCCEN EYYRNQQLPA  240
TADIEVTMVE NHANLKIRSK KRPRLLPTII SGLESLRLTV LHLNVSKVDQ FVLCSLSLKV  300
EEDCKMNSVE DIAAVVNQIL SRIHEEAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104111RPRRRRTR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331330.0AC233133.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-57c7 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230172.10.0transcription factor bHLH96-like
SwissprotQ9C7T45e-73BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3Q7EN260.0A0A3Q7EN26_SOLLC; Uncharacterized protein
STRINGSolyc01g098720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132271518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]