PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g096700.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 611aa    MW: 69367 Da    PI: 7.6284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g096700.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09553597345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W++  ++ lv+a k ++++   +W+++a  ++ g+t +qck ++ 
  Sopim01g096700.0.1 553 VWSAVQEKALVQALKTFPKEtsqRWERVATAVP-GKTMNQCKKKFA 597
                         7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.96E-2087175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.1E-2094197IPR001623DnaJ domain
SMARTSM002713.0E-1696171IPR001623DnaJ domain
CDDcd062571.57E-1397168IPR001623DnaJ domain
PfamPF002264.1E-1797176IPR001623DnaJ domain
PROSITE profilePS5007618.59297179IPR001623DnaJ domain
PRINTSPR006251.6E-7102120IPR001623DnaJ domain
PRINTSPR006251.6E-7120135IPR001623DnaJ domain
PRINTSPR006251.6E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.098416471IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-4417463IPR009057Homeodomain-like
SMARTSM007172.8E-4420473IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-6422465IPR009057Homeodomain-like
CDDcd001671.94E-4423463No hitNo description
PROSITE profilePS512939.457549604IPR017884SANT domain
SMARTSM007178.6E-9550602IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-9552606IPR009057Homeodomain-like
PfamPF002491.1E-7553596IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-5553596IPR009057Homeodomain-like
CDDcd001671.77E-4559600No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MASRSSIRLI SYSNEIINGE PIYISSNCYP IKAHKYEPAG LAFHSAALRL IGHVEKEDPK  60
DGKEDVPNDK EQTFAYSSES YSSKGKKKSS TGEKVQDHYA LLGLSNLRYL ASEDQIRKSY  120
RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLMDPV RRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFLRNGRWSV TQPIPSLGDE NTPIKEVDSF YNFWYSFKSW  240
REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEETA REAEAIRIVE EDKRKKEEEE  300
KRAAEVALQQ KKLKEKEKKL LRKERSRLRT LAAPVLSQRL LGLNDDDVEG LCMSLDIEQL  360
RNLCDKADGQ GEIVIAELLR GALGHEHNLK YENKDEKIKS QQNGSLDSKK QVPLMSSEKK  420
EKPWSKEEID LLRKGMLKYP KGTSRRWEVI SDYIGTARTV EEILKATKTV LLQKPDSAKA  480
FDSFLEKRKP APTIVSPLST RAEVEGVENS SKPESGSAKV ADSQETPSQN TNSQNTEDAP  540
TANGVSSSSD SDVWSAVQEK ALVQALKTFP KETSQRWERV ATAVPGKTMN QCKKKFALLK  600
ENFRSKKSAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1718629613124Zuotin
5dje_B1e-1718629613124Zuotin
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001332867.10.0gonidialess A/Zuotin related factor-like protein
TrEMBLA0A3Q7ELW10.0A0A3Q7ELW1_SOLLC; Uncharacterized protein
STRINGSolyc01g096700.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95572225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-109DnaJ domain ;Myb-like DNA-binding domain