PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim01g096120.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 277aa MW: 29843.1 Da PI: 9.5591 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.9 | 5.3e-39 | 33 | 92 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s Sopim01g096120.0.1 33 DGAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRLS 92 56799****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 26 | 90 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.9E-34 | 35 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.835 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
MESTQWSTHE EIGVVKSSMG AEIMNKKVRP VKDGAINCPR CNSINTKFCY YNNYSLTQPR 60 YFCKTCRRYW TEGGTLRNVP VGGGSRKNKR LSSSSSSSQK LPDLNPNPTS HHQNPNNIVI 120 GSNQDLTLGF RTVPQDHHTS FHGVIPQFLE FPKMDGSNNH LGSRTGIASR GFTSFISSAS 180 TPDLNALYNS GFPFQEIKPS AGNADHAASL SNSNYSSGGP GGLENGSGAR IMFPLGGLKQ 240 LSSTNQVDHL TKGQENNNST AGLYWSGMIS GTGGSW* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC233120 | 0.0 | AC233120.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229998.1 | 0.0 | dof zinc finger protein DOF2.5-like | ||||
TrEMBL | A0A3Q7ELV1 | 0.0 | A0A3Q7ELV1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g096120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61850.4 | 5e-53 | Dof family protein |