PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g095500.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 33751.1 Da PI: 5.1859 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.7e-19 | 95 | 146 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++++GVr+++ +g+W AeIrdp++ ++r++lg+f+taeeAa + a+ +l+g+ Sopim01g095500.0.1 95 KKFRGVRQRP-WGKWSAEIRDPVK---KTRVWLGTFDTAEEAAMKYNIAAIQLRGA 146 59********.**********654...5*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.94E-32 | 95 | 152 | No hit | No description |
SMART | SM00380 | 4.3E-34 | 96 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 96 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-21 | 96 | 152 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.972 | 96 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-12 | 96 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-11 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MESQKIKKKL VHKTITTKYD HHNKWTPKVV RICYTDCDAT DSSSDDDDDE RNRVKKYVTE 60 IKFEKKMAAA DVRKSLNSNK KKKKAIDLKR DENVKKFRGV RQRPWGKWSA EIRDPVKKTR 120 VWLGTFDTAE EAAMKYNIAA IQLRGADAII NFIETPFPKE NAITSVSDYD STGECENLCS 180 PTSVLRQNNN NNDKDNEDAI AIDTKIMNDE SKKMEMDENG FMFDDNLPLM DQSFLKDFFD 240 FRSPSPLMDD VLLPGFSDGM GLLPEVLSIH GNRMLDEDLE TCKWANDFFQ DVC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 95 | 152 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231199.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A3Q7ELA9 | 0.0 | A0A3Q7ELA9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g095500.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 8e-36 | cytokinin response factor 4 |