PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g094360.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 310aa    MW: 34624.6 Da    PI: 7.5005
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g094360.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66.1e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEde+lv+ +++ G g+W++ ++  g+ R++k+c++rw +yl
  Sopim01g094360.0.1 14 RGPWTPEEDEKLVQFINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                        89******************************99************97 PP
2Myb_DNA-binding47.63.9e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Sopim01g094360.0.1  67 RGPFSPEEQKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.679961IPR017930Myb domain
SuperFamilySSF466892.46E-3012108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
CDDcd001671.91E-111661No hitNo description
PROSITE profilePS5129423.55362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2465116IPR009057Homeodomain-like
SMARTSM007171.6E-1366114IPR001005SANT/Myb domain
PfamPF002493.0E-1467112IPR001005SANT/Myb domain
CDDcd001671.55E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRTPCCDKN GLTRGPWTPE EDEKLVQFIN KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIIRGPF SPEEQKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLSMG  120
IDPQTHEQYS DPNGLLRRPA TSPSARHLAQ WESARLEAEA RLSRESQFLV PSSVGRSETD  180
YFLRIWNSEI GESFRKFKKG EKNACQSPTS QASTCTKYGS ASGITTEFEL GVAGSPVTGS  240
NQHEYKEWKI GQPYTEDFLQ GSDTSSSNAM EDSSESALQL LLDFPSNNDM SFLGHSDSYS  300
LYPFLSESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229941.10.0transcription factor MYB41-like
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A3Q7EKV60.0A0A3Q7EKV6_SOLLC; Uncharacterized protein
STRINGSolyc01g094360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-118myb domain protein 17