PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g091760.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 292aa    MW: 32393.4 Da    PI: 7.7293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g091760.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.2e-203484256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa a+++a+++l+ge
  Sopim01g091760.0.1 34 KFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAAHAYDEAARALRGE 84
                        799******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-203491IPR016177DNA-binding domain
CDDcd000189.60E-313491No hitNo description
SMARTSM003802.6E-363497IPR001471AP2/ERF domain
PROSITE profilePS5103220.2313491IPR001471AP2/ERF domain
PfamPF008478.1E-153484IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-283492IPR001471AP2/ERF domain
PRINTSPR003678.8E-73546IPR001471AP2/ERF domain
PRINTSPR003678.8E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MATDLENTKT TITTNTNTTN SSSTEAKKSS ITRKFVGVRQ RPSGRWVAEI KDSSQRVRLW  60
LGTYDTPEEA AHAYDEAARA LRGENARTNF ASTTPNSDMD QSNILHSKNG LSFSSIKAKL  120
SKNLQSIMAR NSENKSSSSK SITRVSDHFT FARIFHFKNN YDQPYQNHRH VDMNKVVQPS  180
IRVLPHDVTD NNNNNDSSWE NSSSVSDCSS EWAAFRQLGL DCDNYGSDGS EYFVGSDPLM  240
AGWMSSPDIM SSTSTNEGSS RSKRFKVSSS VVVPPTFTES PLHDAQNYVP F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1334901471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231173.10.0ethylene-responsive transcription factor ERN3-like
TrEMBLA0A3Q7EKU00.0A0A3Q7EKU0_SOLLC; Uncharacterized protein
STRINGSolyc01g091760.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125641721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-20related to AP2 11