PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim01g090560.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 30485.6 Da PI: 6.5905 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr p++ + r++lg++ tae+Aa+a++ a+++++g Sopim01g090560.0.1 99 TYRGVRKRN-WGKWVSEIRQPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 148 69****887.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.551 | 99 | 156 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.2E-36 | 99 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 99 | 157 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-13 | 99 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-32 | 99 | 157 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 100 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.68E-33 | 100 | 158 | No hit | No description |
PRINTS | PR00367 | 1.4E-10 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MEDHNEFSIS SSTNSTTSSF TSCCSNNNCL CSTSTTTCST SSTSSNNCLH ESIAKTSSND 60 HYKCKSKKSA KKNQDGNEEE DNTKIRRKKQ CVVDEKHPTY RGVRKRNWGK WVSEIRQPRK 120 KSRIWLGTYP TAEMAARAHD VAALAIKGDS AYLNFPHLAD QLPRPASASP KDIQAAAAKA 180 AAASIFLEEN SVESSQLTGL HSSHSSTNLA SDNVQELLNS PSMDHDDPFF DLPDLIIDRL 240 DQNDRYQYPV STWQLAGADS GMFRLDEPFL WECY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-19 | 93 | 157 | 8 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC239649 | 0.0 | AC239649.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-202l21 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229764.1 | 0.0 | ethylene-responsive transcription factor ERF038-like | ||||
Swissprot | Q8LBQ7 | 5e-58 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A3Q7F421 | 0.0 | A0A3Q7F421_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g090560.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44940.1 | 4e-51 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|