PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g090530.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 320aa    MW: 36330.3 Da    PI: 6.9313
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g090530.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.7e-14651146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        +g+W +eEd+ l++ vk++G+++W++I ++  + Rt+k+c++rw +
  Sopim01g090530.0.1  6 KGPWKEEEDQVLIKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 51
                        79*************************8887799**********87 PP
2Myb_DNA-binding46.48.9e-1562101344
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                         ++++eE+   +++ +q+G++ W++Ia +m+ gRt++++k++w
  Sopim01g090530.0.1  62 KFSAEEERTVIELQAQFGNK-WARIATYMP-GRTDNDVKNFW 101
                         79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.9157IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-21354IPR009057Homeodomain-like
SuperFamilySSF466891.29E-284101IPR009057Homeodomain-like
SMARTSM007178.6E-12555IPR001005SANT/Myb domain
CDDcd001677.09E-12853No hitNo description
PfamPF139211.5E-12959No hitNo description
Gene3DG3DSA:1.10.10.602.1E-1855107IPR009057Homeodomain-like
PROSITE profilePS5129418.00358109IPR017930Myb domain
SMARTSM007174.9E-1359107IPR001005SANT/Myb domain
PfamPF002494.8E-1362101IPR001005SANT/Myb domain
CDDcd001678.87E-1162101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSEIKKGPWK EEEDQVLIKH VKKYGPRDWS SIRSKGLLQR TGKSCRLRWV NKLRPNLKNG  60
VKFSAEEERT VIELQAQFGN KWARIATYMP GRTDNDVKNF WSSRQKRLAK ILRNSVPQPS  120
KPQKNISKEA PDLLKAPSVE EPKLNSSADE RALVVSQHCS SSYTNNFDTI NMVPLPELVN  180
STSLPFDQEL PPLEFTPSEK KICIWPQFPL PFPHIPVQTN FGQPLEHQEL PMKLEDSDFL  240
DYFGQLSASD LGGNVQVPLA PSCSSGQDQR SSEIGVKREM AEIGVKREME YPLTPDSFIN  300
DFPLDMFDYI DPLQSPSGW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-29310724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231152.10.0transcription factor DUO1
TrEMBLA0A3Q7F4170.0A0A3Q7F417_SOLLC; Uncharacterized protein
STRINGSolyc01g090530.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-76MYB family protein