PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g090300.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 203aa    MW: 22735.5 Da    PI: 8.2237
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g090300.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19107157255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp     k +r +lg++gt+e+Aa a+++a+ k++g
  Sopim01g090300.0.1 107 RYRGVRRRP-WGKFAAEIRDP---DrKGARLWLGTYGTPEDAALAYDQAAYKIRG 157
                         7********.**********8...3245*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-23107166IPR016177DNA-binding domain
CDDcd000188.73E-31107167No hitNo description
PROSITE profilePS5103223.986107165IPR001471AP2/ERF domain
PfamPF008471.2E-14107157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-31107166IPR001471AP2/ERF domain
SMARTSM003805.9E-36107171IPR001471AP2/ERF domain
PRINTSPR003672.4E-13108119IPR001471AP2/ERF domain
PRINTSPR003672.4E-13147167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MYQQKSTTIS DSDLSVLENI KFHLVNDSDF SQILSMFDPI NISHADIINS PNSSYGSSTS  60
AAEISWGDMI TNIDSPWQCI DKLEHEEAPK EEPLVARGVH APGDWNRYRG VRRRPWGKFA  120
AEIRDPDRKG ARLWLGTYGT PEDAALAYDQ AAYKIRGSKA RLNFPHLIGS DISEPVRVAP  180
RKRCHSSQSS LVEYTSSKKR KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-27108165360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-26108170668ATERF1
3gcc_A1e-26108170668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180200RKRCHSSQSSLVEYTSSKKRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231147.11e-150ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-39ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A3Q7EKJ31e-129A0A3Q7EKJ3_SOLLC; Uncharacterized protein
STRINGSolyc01g090300.2.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-41ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]