PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim01g087130.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 39181.6 Da PI: 6.1816 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.9e-15 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + + G g+W+ Iar g+ R++k+c++rw +yl Sopim01g087130.0.1 27 KGLWSPEEDEKLMSYMLRNGQGCWSDIARNAGLQRCGKSCRLRWINYL 74 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.2e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++ +E+el+v+++ lG++ W+ Ia++++ gRt++++k++w++ Sopim01g087130.0.1 80 RGAFSLQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 123 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.552 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.08E-28 | 25 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-11 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-14 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-23 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-9 | 30 | 74 | No hit | No description |
PROSITE profile | PS51294 | 24.369 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-15 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-14 | 80 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-24 | 82 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.05E-10 | 82 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 353 aa Download sequence Send to blast |
MRKPEHNNTT MKEKEKEKVN KLGKLRKGLW SPEEDEKLMS YMLRNGQGCW SDIARNAGLQ 60 RCGKSCRLRW INYLRPDLKR GAFSLQEEEL IVHLHSILGN RWSQIAARLP GRTDNEIKNF 120 WNSTIKKRSK NNNNSTPSPN TSDSSIGGIF PMQGHDVNNV MATLCMDNSS STTSGSSMQA 180 MVPFNPFPQL DSTSYDISGL VGPVNLGQFG CSGGDGGFLD YGVVETYSMM GLGSDEFSIP 240 SLEGVHNKST TTMGESNNNS NVDFSSNNIV SGANDYDSMI EKKNNTNVNN NNNQHLMNMS 300 GISDQSLKVE DYMVGFGNHH HWHGESLRIG EFDWEGLLAN VSSLPYLDFQ VE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 25 | 128 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229624.1 | 0.0 | transcription factor MYB46-like | ||||
TrEMBL | M1A9C0 | 0.0 | M1A9C0_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g087130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12870.1 | 4e-62 | myb domain protein 46 |