PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g086870.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 408aa    MW: 45028 Da    PI: 5.5187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g086870.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12335380655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L++l P+     +k  + a++L +Av+YIk+Lq
  Sopim01g086870.0.1 335 SIAERMRRTRISERMKKLQDLFPNM----DKQTNTADMLDLAVDYIKDLQ 380
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-16332396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-12333384No hitNo description
Gene3DG3DSA:4.10.280.103.7E-15334400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13335385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-9335380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MFSSEPISRE MDKLNSFFFS GGGGGSSSFK NGEGMESEFF RSKEMMGSDF FQQQSQFQQS  60
NSGGLTRYRS APSSFFAGIL DGDGNNSGEN FITGDGSSSS DSDSMFTALL NNNDTTNNNG  120
TRDMNDQNQK NQLQFGTSLK QEIGEEIEFG NENGVQNRYE NGGVSYSVGV QMQTRANLSN  180
GNGDSDLIRQ NSSPAGFFNG FMREVGNFGA SVGTNREAST STNGFNNHIS YSTNQSSTSN  240
FMPSIAENES WNDASFNSLK RNRDGDLKMF STNFNGMTNQ NDESRNYTSS GLSHHLSLPK  300
TSSEMAAIEK YLQFQQDSVP CKIRAKRGCA THPRSIAERM RRTRISERMK KLQDLFPNMD  360
KQTNTADMLD LAVDYIKDLQ KQVQTLTDKK AKCSCTSKQL QYSNGTT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229606.10.0transcription factor bHLH130
TrEMBLA0A3Q7EIP20.0A0A3Q7EIP2_SOLLC; Uncharacterized protein
STRINGSolyc01g086870.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44352238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-65bHLH family protein