PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g079380.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 496aa    MW: 56202.2 Da    PI: 7.0174
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g079380.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.83.4e-921244932374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl.fsevsP 89 
                          + Ll++Ae vs+++  +a+++L++ + las++g+p+qR+++yf+eAL +r+ r++ +l+ ++ +++++ ++  ++++++a  + +++  P
  Sopim01g079380.0.1 124 AQILLAVAEKVSDQHYDRARKFLSQCQLLASNTGNPVQRAVFYFAEALGERIDRETGKLMPKICTETDELNSicVASRFHASFVaLHQEVP 214
                         689***************************************************88888877766666555567444444443359999** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         + ++ h+t  qaIle+v+ + +vH iDf i  G+QW++L+qa a+R+ ++  +++iT+++s   ++ke++ etg+ L++fA++l+ pf+f+
  Sopim01g079380.0.1 215 FTQIVHFTGIQAILESVAMKPKVHLIDFLIRTGVQWASLIQAAAERKdNPIEHMKITVIES---VNKERVIETGKSLESFANSLNFPFSFK 302
                         **********************************************955566*********...78************************* PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         ++   + ++l+ +++++kp+Ea++++ ++ l  +     s++++ ++ +++v++l+P ++vv+e ea++ns+ F++rf+++l yysalfd+
  Sopim01g079380.0.1 303 IIFLPDRNQLTEDHFDIKPDEAVVIHAAFFLRAMI----SIPNCLETAMRVVRRLQPSLMVVSEVEANLNSPLFVNRFIDTLFYYSALFDC 389
                         *9999*************************99998....77777777******************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                         le  + r++++r+++E    g  i+nvv +eg+er+ r  +l  Wr+ l+++G+++v+ls++   qa+l++++++ ++  +v+ ++gs+++
  Sopim01g079380.0.1 390 LEDVMKRDDQHRMTLEVS-YGAGIRNVVGNEGEERVIRSVNLDVWRSFLKRFGMEEVKLSDTCLYQANLIIQQFAcKNSCSVDVNRGSFMI 479
                         ****************99.9*******************************************************9999************ PP

                GRAS 361 gWkdrpLvsvSaWr 374
                          Wk+ p++s+SaW+
  Sopim01g079380.0.1 480 SWKGTPIYSTSAWK 493
                         *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.75797472IPR005202Transcription factor GRAS
PfamPF035141.2E-89124493IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MNKQQEELNE HAAHSAGQLS RGKTKLNNLE TGSNVEEVPF LSLAPFELLS NNPSRCRRRD  60
KVRDVNGGAN MHQKLSATQI MRLAGERFIQ FSSNKFININ NLLHPYGSAF SDLSPEDNQN  120
VELAQILLAV AEKVSDQHYD RARKFLSQCQ LLASNTGNPV QRAVFYFAEA LGERIDRETG  180
KLMPKICTET DELNSICVAS RFHASFVALH QEVPFTQIVH FTGIQAILES VAMKPKVHLI  240
DFLIRTGVQW ASLIQAAAER KDNPIEHMKI TVIESVNKER VIETGKSLES FANSLNFPFS  300
FKIIFLPDRN QLTEDHFDIK PDEAVVIHAA FFLRAMISIP NCLETAMRVV RRLQPSLMVV  360
SEVEANLNSP LFVNRFIDTL FYYSALFDCL EDVMKRDDQH RMTLEVSYGA GIRNVVGNEG  420
EERVIRSVNL DVWRSFLKRF GMEEVKLSDT CLYQANLIIQ QFACKNSCSV DVNRGSFMIS  480
WKGTPIYSTS AWKFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-4714649326375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389180.0AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229557.10.0DELLA protein RGL2-like
TrEMBLA0A3Q7F0W80.0A0A3Q7F0W8_SOLLC; Uncharacterized protein
STRINGSolyc01g079380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139101114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-58RGA-like 2