PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g073910.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 366aa MW: 39963.4 Da PI: 7.7691 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 8.8e-18 | 192 | 246 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Sopim01g073910.0.1 192 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTK 246 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 126.8 | 9.5e-41 | 192 | 282 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq++ LEesF+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l Sopim01g073910.0.1 192 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLHKELQELR-AL 281 69*************************************************************************************9.55 PP HD-ZIP_I/II 92 k 92 k Sopim01g073910.0.1 282 K 282 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-18 | 166 | 249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-18 | 179 | 249 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.184 | 188 | 248 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-15 | 190 | 252 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-15 | 192 | 246 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.83E-15 | 192 | 249 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 223 | 246 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 5.9E-11 | 248 | 282 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.3E-26 | 248 | 291 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MELGLSLGDA NTSSSPKSFF LSKKTVISTC NDHEKKKNLG FCMALGINSS SERVQQDIED 60 EENNTSEEGT NNTLPVQLDL LPLVPLPNPP TNLPQSHHWS SDNGSSENGS SGNGGLPAAR 120 GFDVNRLPAA GMDEVSSPNS VASSFRMDFG LFKSCVNIVG VGNKRNSESA GGEPERASSR 180 ASDDDENGAN TRKKLRLSKE QSAYLEESFK EHHTLNPKQK LALAKQLSLR PRQVEVWFQN 240 RRARTKLKQT EVDCEYLKRC CETLTDENRR LHKELQELRA LKTSNPFYMQ LPATTLTMCP 300 SCERVASTTT TTSAATAPPI TATTATTTTS DSIPKAIPFL NSRPRFFPFT ATNNNPNHSH 360 QSAAS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 190 | 196 | TRKKLRL |
2 | 240 | 248 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229348.1 | 0.0 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | P46665 | 9e-91 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A3Q7F0M4 | 0.0 | A0A3Q7F0M4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g073910.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-75 | homeobox from Arabidopsis thaliana |