PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g068100.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SBP

Protein Properties

Length: 995aa MW: 110349 Da PI: 6.1058

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g068100.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.9	9.2e-41	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ Sopim01g068100.0.1 145 VCQVDDCGTDLSKAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQS 222 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-32	141	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.086	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.93E-38	144	225	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.7E-30	146	219	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.78E-7	765	878	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.9E-5	767	879	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.53E-7	768	878	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MEASVGERFY HMGGTDLRGL GKRSLEWDLT DWKWDGDLFI ATPLQQNPSN YQSRQFFPVE 60 TGNLASSNSS SSCSDEVNHG MEQQRRELEK RRRVIVVDED DSGPLSLKLG GQGEPAADAG 120 REMSNWDGAA GKRTKLAAPA AARAVCQVDD CGTDLSKAKD YHRRHKVCEM HSKASRALVG 180 NVMQRFCQQC SRFHALQEFD EGKRSCRRRL AGHNKRRRKT QSETVANNNS LNDGQTSGYS 240 LMSLLKILSN MHSNGANHTE DQDLLSHLLR SLASQGPTNG DKSLSGLLQE SSNLLNNRSI 300 LRNPEIASLI SNGSQAPPRP KERQFTNSAA EMPQKRLEDA RTASSQSPGI LFPIQSNSQA 360 YTPGRESTTG RSKLIDFDLN DAYVDSDDCG DDIDRSPVPE CPSWLQQDSH QSSPPQTSGN 420 SDSASAQSPS SSSGDNQNRT DRIVFKLFGK GPSDFPFVVR AQILDWLSHS PTEIESYIRP 480 GCVVLTIYLR LPESAWEELS YDLSSSLSRL LDVHGGDSFW TKGWIYIRVQ NQIAFVCDGQ 540 VLLDMSLPCV SNDGSTLLSV RPIAVPVSDR VQFLVKGYNL TKPSTRLLCS LEGNYLDPEA 600 DNEVEEQVAG GDKDDKLQSL NFTCSIPAVG GRGFIEVEDH GVSNSFFPFI IAEEDVCSEI 660 RMLESDLELT SLDYVKGQTN NIEARNQAMD FIHELGWLLH RNNLRARLEH FGPNAVLHPL 720 KRFKWLVEFS VDHEWCAVVK KLLNILLDGT VGGDDSSLKY ALTEMGLLHK AVRRNSRPLV 780 ELLLTYTPTN VADDLCSEYQ SLVGVGGQFL FRPDCVGPGG LTPLHIAAGI DGYEDVLDAL 840 TDDPGKVAIE AWKNTRDSTG FTPEDYARLR GHYSYIHLVQ RKISKKANSG HIVVDIPRVP 900 SVVENSNQKD EVCATTSLEI SMTERKAIPR PCRLCDRKLA YGSRSRSLLY RPAMFSMVAM 960 AAVCVCVALL FRGSPEVLYI FRPFRWEMVD FGTS*

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MEASVGERFY HMGGTDLRGL GKRSLEWDLT DWKWDGDLFI ATPLQQNPSN YQSRQFFPVE  60
TGNLASSNSS SSCSDEVNHG MEQQRRELEK RRRVIVVDED DSGPLSLKLG GQGEPAADAG  120
REMSNWDGAA GKRTKLAAPA AARAVCQVDD CGTDLSKAKD YHRRHKVCEM HSKASRALVG  180
NVMQRFCQQC SRFHALQEFD EGKRSCRRRL AGHNKRRRKT QSETVANNNS LNDGQTSGYS  240
LMSLLKILSN MHSNGANHTE DQDLLSHLLR SLASQGPTNG DKSLSGLLQE SSNLLNNRSI  300
LRNPEIASLI SNGSQAPPRP KERQFTNSAA EMPQKRLEDA RTASSQSPGI LFPIQSNSQA  360
YTPGRESTTG RSKLIDFDLN DAYVDSDDCG DDIDRSPVPE CPSWLQQDSH QSSPPQTSGN  420
SDSASAQSPS SSSGDNQNRT DRIVFKLFGK GPSDFPFVVR AQILDWLSHS PTEIESYIRP  480
GCVVLTIYLR LPESAWEELS YDLSSSLSRL LDVHGGDSFW TKGWIYIRVQ NQIAFVCDGQ  540
VLLDMSLPCV SNDGSTLLSV RPIAVPVSDR VQFLVKGYNL TKPSTRLLCS LEGNYLDPEA  600
DNEVEEQVAG GDKDDKLQSL NFTCSIPAVG GRGFIEVEDH GVSNSFFPFI IAEEDVCSEI  660
RMLESDLELT SLDYVKGQTN NIEARNQAMD FIHELGWLLH RNNLRARLEH FGPNAVLHPL  720
KRFKWLVEFS VDHEWCAVVK KLLNILLDGT VGGDDSSLKY ALTEMGLLHK AVRRNSRPLV  780
ELLLTYTPTN VADDLCSEYQ SLVGVGGQFL FRPDCVGPGG LTPLHIAAGI DGYEDVLDAL  840
TDDPGKVAIE AWKNTRDSTG FTPEDYARLR GHYSYIHLVQ RKISKKANSG HIVVDIPRVP  900
SVVENSNQKD EVCATTSLEI SMTERKAIPR PCRLCDRKLA YGSRSRSLLY RPAMFSMVAM  960
AAVCVCVALL FRGSPEVLYI FRPFRWEMVD FGTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	145	219	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	93	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229181.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A3Q7EGS2	0.0	A0A3Q7EGS2_SOLLC; Uncharacterized protein
STRING	Solyc01g068100.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]