PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g065900.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 289aa MW: 32854.9 Da PI: 7.134 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.9 | 1.9e-16 | 36 | 110 | 17 | 82 |
trihelix 17 meerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +eer+ +++ + +++W++vs++++ +g++r+p+qC+ +w+nl +++kkike+e++ ++e++s + Sopim01g065900.0.1 36 VEERIHQARtrgmelgstQVEAKWDSVSSYCKIQGVNRGPIQCQRRWSNLFGYFKKIKEWESQIKEEKESFWMIR 110 555555432333344444999******************************************999998877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.4E-8 | 38 | 105 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MASESNNLKQ LSLTPSTDFD IRNQSINGLN DGKKVVEERI HQARTRGMEL GSTQVEAKWD 60 SVSSYCKIQG VNRGPIQCQR RWSNLFGYFK KIKEWESQIK EEKESFWMIR NNFKREKKLL 120 GFFDRQVFDI LDHGNDNEEG LDLTSVSEVL SDSGRSVFVE DDGLFSDVPQ KNEDAIPMET 180 SEELYQPLSL VSPTQAGIRQ TTTRGDDKGR GLEGSKGKRN DSNDEKARNV QHHLVKALQK 240 NGKMVSSPLK AQIMHSEWDR EQRKDHVDKL VVVLNKLACA LEKIADKL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246636 | 0.0 | AC246636.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229328.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A3Q7EYY2 | 0.0 | A0A3Q7EYY2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g065900.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-65 | Trihelix family protein |