PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g065890.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 120aa    MW: 14270.6 Da    PI: 8.3175
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g065890.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.32.3e-1429882483
            trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
                         +  +++W++vs++++ + ++r+p+qC+ +w+nl +++ kike+e++ ++e++s + + +
  Sopim01g065890.0.1 29 VNDVEAKWDSVSSYCKIQWVNRGPIQCQRRWSNLFGDFMKIKEWESQIKEEKESFWMMCN 88
                        456689******************************************999998887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-71687No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MASESNNLKQ LILILYTDFD IRNQSINGVN DVEAKWDSVS SYCKIQWVNR GPIQCQRRWS  60
NLFGDFMKIK EWESQIKEEK ESFWMMCNNF KREKNLSGFI IEKCLIFLIM EMAIKKVWT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2466361e-147AC246636.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence.
GenBankHG9755131e-147HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167214.16e-44PREDICTED: trihelix transcription factor ASR3-like
SwissprotQ8VZ205e-30ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A3Q7EFI51e-76A0A3Q7EFI5_SOLLC; Uncharacterized protein
STRINGSolyc01g065890.1.12e-81(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2634722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-32Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]