PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g059960.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 473aa    MW: 53789.8 Da    PI: 8.9933
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g059960.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.39.7e-851004692374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl....fsev 87 
                         v lLl  Ae++++++l +a++lL+   + + ++g+p+qR++ yf+e L++r+++ ++++  +  +  + +++ ++++l+  ++      ++
  Sopim01g059960.0.1 100 VLLLLVSAEMLANRQLDCARKLLNLCINFSLSAGNPVQRVVYYFAESLQKRINK-GTGIPTIAaKIDAVNPNIMEDVLMDPRTdvieTEQM 189
                         5689999**********************************************9.4444443324444444456666666666667789** PP

                GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          P+ k++++t  q Il++v++ +r+H iDf+i+ G QW  L+qaL    e pp +l+iT+vg     s  +++e+g+rL++fA++l++pf+
  Sopim01g059960.0.1 190 LPFRKVTQFTGIQSILDSVKSFKRIHLIDFGIKTGSQWTILMQALVGNGECPPeHLKITAVGT----SLIRMQEVGKRLTSFADTLHIPFS 276
                         **********************************************87765555*********....9*********************** PP

                GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         f++ v+++l  ++ + ++ k gE++a+ +  +l +ll+ + +l+s    ++++ ksl P v+vv+e ea++n++ F +rf eal yysa+f
  Sopim01g059960.0.1 277 FKT-VVSDLRHINKDLFESKVGEVVAIYSDSRLWTLLAWPNHLQS----LIQVCKSLDPCVMVVTEIEANTNTPIFIDRFNEALFYYSAIF 362
                         ***.7999*****************************77766666....****************************************** PP

                GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveeesgsl 358
                         dsle+ ++ +++ r++   ++++r i+nv++ eg+e ++rhe+l++Wr  ++++G ++++ls++   qakll ++   +g  ++e + +sl
  Sopim01g059960.0.1 363 DSLETCIGWNHQYRAVAQGVYIRRIIENVITSEGEEMVHRHEKLRSWRTLFKNFGIEEAELSHSSLYQAKLLAENSTCHGlCSLEMDGKSL 453
                         *****************************************************************************777699******** PP

                GRAS 359 vlgWkdrpLvsvSaWr 374
                         ++ Wk+ p+ s+SaW+
  Sopim01g059960.0.1 454 IIKWKGTPIKSLSAWK 469
                         ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.02273448IPR005202Transcription factor GRAS
PfamPF035143.3E-82100469IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MKALFLDYTL SYMNLTSLYF KMATAKRTTV SIFIICFKKR KPPRYRRPKM VLSTTTIMKI  60
AKEQLKLYTS QNHDAYSIIF SPLIADLGLS PQVTEEVELV LLLLVSAEML ANRQLDCARK  120
LLNLCINFSL SAGNPVQRVV YYFAESLQKR INKGTGIPTI AAKIDAVNPN IMEDVLMDPR  180
TDVIETEQML PFRKVTQFTG IQSILDSVKS FKRIHLIDFG IKTGSQWTIL MQALVGNGEC  240
PPEHLKITAV GTSLIRMQEV GKRLTSFADT LHIPFSFKTV VSDLRHINKD LFESKVGEVV  300
AIYSDSRLWT LLAWPNHLQS LIQVCKSLDP CVMVVTEIEA NTNTPIFIDR FNEALFYYSA  360
IFDSLETCIG WNHQYRAVAQ GVYIRRIIEN VITSEGEEMV HRHEKLRSWR TLFKNFGIEE  420
AELSHSSLYQ AKLLAENSTC HGLCSLEMDG KSLIIKWKGT PIKSLSAWKF HQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-4413246936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389080.0AC238908.8 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126f9 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229078.10.0DELLA protein RGL2-like
TrEMBLK4AWA30.0K4AWA3_SOLLC; Uncharacterized protein
STRINGSolyc01g059960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-56RGA-like 2