PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g057910.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 288aa    MW: 33023.8 Da    PI: 7.0846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g057910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-182774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd+ l ++++ +G g+W+t ar+ g++Rt+k+c++rw++yl
  Sopim01g057910.0.1 27 RGPWTVEEDLTLMNYIAHHGEGRWNTLARCAGLKRTGKSCRLRWLNYL 74
                        89********************************************97 PP
2Myb_DNA-binding51.52.3e-1680123146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Sopim01g057910.0.1  80 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 123
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8542278IPR017930Myb domain
SuperFamilySSF466894.87E-3124121IPR009057Homeodomain-like
SMARTSM007172.0E-142676IPR001005SANT/Myb domain
PfamPF002492.2E-162774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-232881IPR009057Homeodomain-like
CDDcd001678.71E-112974No hitNo description
SMARTSM007171.3E-1479127IPR001005SANT/Myb domain
PROSITE profilePS5129418.70779129IPR017930Myb domain
PfamPF002494.6E-1580123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-2382128IPR009057Homeodomain-like
CDDcd001673.81E-7100123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDHQHVKVNL SRGDANNKNE DDMDLRRGPW TVEEDLTLMN YIAHHGEGRW NTLARCAGLK  60
RTGKSCRLRW LNYLRPDVRR GNITLEEQLL ILELHSRWGN RWSKIAQHLP GRTDNEIKNY  120
WRTRVQKHAK QLKCDVNSKQ FKDTMRYLWM PRLVERIQAA AGAGASTSSE VINPQNIVQI  180
DHNTCVTNSS TATASSDNSF GTPVSDLTDC CYNYPQQQQD CFQFVGESLI SPTGYFHHAL  240
EFQGAAASAI DHQQNTTQWM DGANFSDNLW NIEDMWFLQQ QLNNNVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242412724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2465820.0AC246582.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-26i13 map 1, complete sequence.
GenBankAC2466420.0AC246642.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-41f18 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229031.10.0transcription factor MYB78-like
SwissprotQ9FGY33e-95MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A3Q7EEG30.0A0A3Q7EEG3_SOLLC; Uncharacterized protein
STRINGSolyc01g057910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-91myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]