PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g057300.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 308aa MW: 34544.4 Da PI: 8.0085 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.5e-10 | 101 | 148 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ Er RR+++ + f++L +l+P++ +K + ++i+ +Av++I +Lq Sopim01g057300.0.1 101 IHKWTERERRKKMLTLFDTLHDLVPNL----PTKADQSTIVGEAVNHILELQ 148 58889*********************6....39******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.2E-13 | 94 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.15E-10 | 95 | 149 | No hit | No description |
PROSITE profile | PS50888 | 13.465 | 97 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.1E-8 | 101 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-11 | 101 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.002 | 105 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MKKKKMNEGG GNDHDADVWS YLDLNDYQVG SGEKFEGDKV LDLTRSDACQ PLTIVNEMFE 60 VNIYAAKNRS PPNREKNGKG IAEPKSGVDR GGGKRESKHK IHKWTERERR KKMLTLFDTL 120 HDLVPNLPTK ADQSTIVGEA VNHILELQNI FTKLKSQKLE RLEEYNIRLM SSQKVDNSWE 180 KYVGDQVSTN NSTVITPTTH GPSPLIPTGF MTWSSPNVIL NVCGEDAHIS VCFPKNPKLF 240 AIICYVLEKH KIDILSAQVS SDQFRSMFMI QAHAKGGSEL ALFSEVFTVE DMFKQAAIEI 300 RALTTSK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246133 | 0.0 | AC246133.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-15m4 map 1, complete sequence. | |||
GenBank | AC246574 | 0.0 | AC246574.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-23o7 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004229120.2 | 0.0 | transcription factor bHLH95-like | ||||
TrEMBL | A0A3Q7EXJ9 | 0.0 | A0A3Q7EXJ9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g057300.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1324 | 23 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-40 | bHLH family protein |