PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g057080.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 114aa    MW: 12366 Da    PI: 9.7698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g057080.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-17655255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+G+r +k +g+Wv+eIr+p   g +  r +lg++ ++e Aa a++ a  +l+ 
  Sopim01g057080.0.1  6 KYRGIRKRK-WGKWVSEIRVP---G-SsERLWLGTYTSPEAAAIAHDIAYYCLRP 55
                        8*****999.**********8...4.34************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.34E-23567No hitNo description
SMARTSM003803.6E-23673IPR001471AP2/ERF domain
PfamPF008471.3E-8653IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-24667IPR001471AP2/ERF domain
PROSITE profilePS5103220.626667IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-16667IPR016177DNA-binding domain
PRINTSPR003675.9E-9718IPR001471AP2/ERF domain
PRINTSPR003675.9E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MSSGAKYRGI RKRKWGKWVS EIRVPGSSER LWLGTYTSPE AAAIAHDIAY YCLRPESSSS  60
LHKLNFPSML PPNVQPGMSP TSVQKVASDA AMAIDAQFLT TPTPAQQHAD NYG*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229130.15e-80ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I84e-38ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A3Q7EXE61e-78A0A3Q7EXE6_SOLLC; Uncharacterized protein
STRINGSolyc01g057080.1.12e-79(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94942028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-40ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]