PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g021730.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 30369.1 Da PI: 6.7799 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73.8 | 4.2e-23 | 5 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk.....kvka..eek..ewy.fFskrdkkyatgkrknr.atk 79 GfrF+Ptd e v +L + ++gk ++ + + ++vd y k ePwd+ + + + e++ + y fF+++ kk+ +++r +r + + Sopim01g021730.0.1 5 KEGFRFSPTDAEAV-TFLLRFIAGKFMNDSGFiTTHVDTYgKQEPWDIYShgvacS--NddEDNdcSQYrFFITKLKKK-SESRYSRdVGN 91 68************.8999999999988878835566877367*****73356541..222333343352666666655.56788886889 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g Wk++ k+k+v +k+g ++g kk++ + + + + ++ dW+m+ey+l Sopim01g021730.0.1 92 KGSWKQQDKSKSVRRKGGPVIGYKKSMSYMN-KGYNKKNGDWLMKEYTL 139 *****************************94.5555589********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-21 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.034 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-14 | 6 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGNLKEGFRF SPTDAEAVTF LLRFIAGKFM NDSGFITTHV DTYGKQEPWD IYSHGVACSN 60 DDEDNDCSQY RFFITKLKKK SESRYSRDVG NKGSWKQQDK SKSVRRKGGP VIGYKKSMSY 120 MNKGYNKKNG DWLMKEYTLP EYLLDKFDKD CRDYVLCSIK KRTRSKTQTK EKLKLVNIVP 180 EESTNLEDQS SATVGSTSFT EELQGRGVDA GGYLPQLELQ NEMHEGTSIF VETLPAPFTF 240 EPTSMLDFDY QYLPADFDFL RSITA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC245978 | 0.0 | AC245978.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-3l17 map 1, complete sequence. | |||
GenBank | AC246193 | 0.0 | AC246193.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-27p13 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228763.1 | 0.0 | NAC domain-containing protein 78-like | ||||
TrEMBL | A0A3Q7ECE5 | 0.0 | A0A3Q7ECE5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g021730.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44290.1 | 1e-12 | NAC domain containing protein 60 |