 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sopim01g014960.0.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
bHLH |
| Protein Properties |
Length: 250aa MW: 27457.6 Da PI: 6.2273 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopim01g014960.0.1 | genome | CSHL | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 12.7 | 0.00024 | 66 | 82 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS
HLH 39 sKaeiLekAveYIksLq 55
K++i+ekAv++I++Lq
Sopim01g014960.0.1 66 GKSTIVEKAVNHIQKLQ 82
59**************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 250 aa
Download sequence Send
to blast |
MNGGGENNHV FPWETNDGWP YQNLNGNQIG SGVTFEGDKL QDPNRFDTYE PLTAVNEVIE 60
ASTNAGKSTI VEKAVNHIQK LQNTFEKLEH EKLKRLQEHN VRCMSSQKFT NAGNNWEKYQ 120
GDQGSTHNSS SIASTTHGTN PLMVNNNIPT GFVTWSSPNV IVNVCGENAH ISVCCPKKSG 180
LFTFIGYVLG KHQIEILSAQ VSCDQFRSMF MIQAHATGGT GIAQVSEASR VEEMYKQVAI 240
EIMSFATPN*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
