PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g014720.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 175aa    MW: 19833.5 Da    PI: 10.233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g014720.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18104154155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ++y+GVr++k +g+WvAeIrd ++   +kr +lg+f ta+eAa a+++a+ +++g
  Sopim01g014720.0.1 104 KKYRGVRQRK-WGSWVAEIRDIRI---NKRRWLGSFATAYEAALAYDKAAIEIKG 154
                         59*******9.**********544...4***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.92E-28104160No hitNo description
Gene3DG3DSA:3.30.730.101.2E-25105160IPR001471AP2/ERF domain
PROSITE profilePS5103219.678105162IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17105161IPR016177DNA-binding domain
SMARTSM003802.3E-31105168IPR001471AP2/ERF domain
PfamPF008472.5E-12105154IPR001471AP2/ERF domain
PRINTSPR003673.3E-8106117IPR001471AP2/ERF domain
PRINTSPR003673.3E-8128144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MASKDELHEN EVVKNQSKDA RGNKTNLMGD CSVVLQRVVR IYITDNDATD SSSDEEENHQ  60
GEKSKRQKRI CKEIIIKNGK TNVTSKMVSS KEKNVTKTHQ ENVKKYRGVR QRKWGSWVAE  120
IRDIRINKRR WLGSFATAYE AALAYDKAAI EIKGPNALTN ILKPPPKESD PINH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-15104161462ATERF1
3gcc_A3e-15104161462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2458290.0AC245829.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-4l7 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885736.11e-125ethylene-responsive transcription factor ERF069-like
SwissprotQ9SUE35e-32CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A097F7I61e-119A0A097F7I6_9SOLA; CRF7
STRINGSolyc01g014720.1.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-25cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]