PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g010600.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 28291.7 Da PI: 6.5837 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.4e-18 | 76 | 127 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le Fe +++ e++ +LA+ lgL+ rqV +WFqNrRa++k Sopim01g010600.0.1 76 RRLNMEQVKTLEMNFELGNKLESERKIQLARALGLQPRQVAIWFQNRRARWK 127 57899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.3 | 1e-38 | 74 | 165 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k rrl+ eqvk+LE++Fe +kLe+erK +lar+Lglqprqva+WFqnrRAR+ktkqlEk y++Lkr++d +k++ne+L +++++L++e++ Sopim01g010600.0.1 74 KIRRLNMEQVKTLEMNFELGNKLESERKIQLARALGLQPRQVAIWFQNRRARWKTKQLEKHYDVLKREFDVIKSQNEALLAHNNKLQAEIM 164 669************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 + Sopim01g010600.0.1 165 T 165 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.228 | 69 | 129 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-18 | 70 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.4E-17 | 72 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-14 | 73 | 130 | No hit | No description |
Pfam | PF00046 | 3.1E-15 | 76 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-18 | 77 | 136 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 100 | 109 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 109 | 125 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.2E-14 | 129 | 168 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MTSCNNEMDF FPTNLMQHTP HEDNHQDHFH GVTSFLGKRS MSFSSKCDDQ NHGDQEDVLS 60 DDGTHHEAIL REKKIRRLNM EQVKTLEMNF ELGNKLESER KIQLARALGL QPRQVAIWFQ 120 NRRARWKTKQ LEKHYDVLKR EFDVIKSQNE ALLAHNNKLQ AEIMTLKNGK GPTESINLNK 180 ETDQGSICST RSENSTEIMK LQCNNMKLMD QTVKEETLSN IFCGIDDNSS GFWPWLDQQP 240 HFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC245835 | 0.0 | AC245835.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-8i3 map 1, complete sequence. | |||
GenBank | AC246709 | 0.0 | AC246709.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-58g10 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004228394.1 | 0.0 | homeobox-leucine zipper protein ATHB-13 isoform X2 | ||||
Swissprot | Q8LC03 | 2e-77 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | M0ZJU9 | 1e-160 | M0ZJU9_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g010600.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 8e-80 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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