PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g009840.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 252aa MW: 28678.7 Da PI: 6.4348 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 74.6 | 1.8e-23 | 83 | 162 | 76 | 153 |
GRAS 76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg 153 + ++l+l+++v Pi kf h+t N+ +++a+eg+++ iiDfd +q lQWp+L+q+L sR ++p ++RiTg+g+++++ Sopim01g009840.0.1 83 FSSTVLRLLNQVRPISKFIHFTSNEIMVRAFEGKDQAYIIDFDTEQVLQWPNLFQSLVSRHKPPSqiHVRITGIGESKQD 162 44567789*****************************************************9987789*******96644 PP | |||||||
2 | GRAS | 33.3 | 6.4e-11 | 192 | 231 | 287 | 326 |
GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 +el++r+i+n++a eg++ +erhe ++kWr+ +e+ GF+ Sopim01g009840.0.1 192 EELFARDIRNIIAREGRDMIERHEYFGKWRKLMEQGGFQM 231 567***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.129 | 1 | 251 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.4E-21 | 84 | 162 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-8 | 192 | 231 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLTGCSSSLD LPQAHHLPNN QWDDDAAELI SLLCVEAIGS RNVTGVNQLI ARLGRLAYLR 60 GSPDLVSNFH IIPTQVLDCL DVFSSTVLRL LNQVRPISKF IHFTSNEIMV RAFEGKDQAY 120 IIDFDTEQVL QWPNLFQSLV SRHKPPSQIH VRITGIGESK QDLGIDLWMH HVKEGENVAV 180 FHWTALVGFK TEELFARDIR NIIAREGRDM IERHEYFGKW RKLMEQGGFQ MHRDYRKGTA 240 SESNSVEDVL I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-16 | 34 | 163 | 26 | 172 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018828643.1 | 5e-61 | PREDICTED: scarecrow-like protein 28 isoform X2 | ||||
Swissprot | Q9CAN3 | 7e-39 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
TrEMBL | A0A3Q7E9R0 | 1e-146 | A0A3Q7E9R0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g009840.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25989 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 3e-41 | GRAS family protein |