PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g008910.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 477aa    MW: 53593.2 Da    PI: 6.4109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g008910.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS463.41.3e-141514731374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lLl+cA++v++g+le+a+ +L ++s lasp+gd+mqR+a+yf+e La r++rs++++ykal++++ +   +se + + k+f+e +P+l
  Sopim01g008910.0.1  51 LIHLLLACANHVANGNLENANIALDQISYLASPNGDTMQRIASYFAESLADRILRSWNGIYKALNSTKLR--VVSEDILVKKMFFEYFPFL 139
                         689**************************************************************99998..69***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         k++ ++aNqaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++    +k+ le++++ L++ Ae+l+vpf+f+  v
  Sopim01g008910.0.1 140 KVASVIANQAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKQVLEQIAHVLTEEAEKLDVPFQFHQ-V 225
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll..........................................................d 215
                         +++le+l++e+Lrvk+gEala+++v+qlh+ll                                                          +
  Sopim01g008910.0.1 226 VSKLENLDIEKLRVKTGEALAISSVMQLHTLLahddepqkksplgfkhlngvhlqrailnqntlgdllenemmthsvfspgnesasssplS 316
                         99**********************************************************************************9877653 PP

                GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                         +s+s+  + + +L+++++lsPkv+vv+eq+++hn+++++er++e+l+yy+alfd+le +l r+s er kvE++++g+ei+n+vaceg err
  Sopim01g008910.0.1 317 SSAST--KMEGFLHALWGLSPKVMVVTEQDSNHNGTTLMERLSESLYYYAALFDCLEFTLQRTSLERLKVEKMMFGEEIKNIVACEGGERR 405
                         33333..4588******************************************************************************** PP

                GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         erhe+l kW +rl+ aGF +vpls++a+ qa++ll+ ++ +gy++++e+gs+v++W+dr+L+svSaWr
  Sopim01g008910.0.1 406 ERHEKLDKWFQRLDGAGFMNVPLSYYAMLQARRLLQSYSCEGYKIKDENGSVVICWHDRALFSVSAWR 473
                         *******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.29425453IPR005202Transcription factor GRAS
PfamPF035144.4E-13951473IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MLQDDGSSSV TSSSPLQNFP VMSISPSFVG GGGSPYQWLK DLKSEDRGLY LIHLLLACAN  60
HVANGNLENA NIALDQISYL ASPNGDTMQR IASYFAESLA DRILRSWNGI YKALNSTKLR  120
VVSEDILVKK MFFEYFPFLK VASVIANQAI IEAMEGEKMV HIVDLNASEP LQWRALLQDL  180
SARPEGPPHL RITGVHQQKQ VLEQIAHVLT EEAEKLDVPF QFHQVVSKLE NLDIEKLRVK  240
TGEALAISSV MQLHTLLAHD DEPQKKSPLG FKHLNGVHLQ RAILNQNTLG DLLENEMMTH  300
SVFSPGNESA SSSPLSSSAS TKMEGFLHAL WGLSPKVMVV TEQDSNHNGT TLMERLSESL  360
YYYAALFDCL EFTLQRTSLE RLKVEKMMFG EEIKNIVACE GGERRERHEK LDKWFQRLDG  420
AGFMNVPLSY YAMLQARRLL QSYSCEGYKI KDENGSVVIC WHDRALFSVS AWRCRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-40354752380Protein SCARECROW
5b3h_D6e-40354752380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228489.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A3Q7E9470.0A0A3Q7E947_SOLLC; Uncharacterized protein
STRINGSolyc01g008910.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]