PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g008890.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 304aa    MW: 34801.8 Da    PI: 10.3185
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g008890.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1962111154
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                         ++ykGVr+++ +g+W+AeIrd    n  ++r +lg+f+taeeAa a+++a+ +++
  Sopim01g008890.0.1  62 KKYKGVRQRR-WGKWAAEIRDtK--N--KTRLWLGSFDTAEEAALAYDKAAIEIR 111
                         59*****998.**********33..3..4**********************9987 PP
2AP261.81.5e-19218268256
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr++k +g+W+AeIrd      k++r +lg+f+ta eAa a+++a+ +++g+
  Sopim01g008890.0.1 218 KYRGVRRRK-WGKWAAEIRDtR----KKTRLWLGTFDTALEAALAYDKAAIEIRGA 268
                         8*****998.**********33....36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.36E-2662111No hitNo description
PfamPF008471.2E-1363112IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1863113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2563112IPR001471AP2/ERF domain
PROSITE profilePS5103220.38963122IPR001471AP2/ERF domain
SMARTSM003808.2E-2963128IPR001471AP2/ERF domain
PRINTSPR003672.7E-106475IPR001471AP2/ERF domain
PRINTSPR003672.7E-1086102IPR001471AP2/ERF domain
PROSITE profilePS5103222.036218275IPR001471AP2/ERF domain
PfamPF008471.5E-14218267IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-28218273IPR001471AP2/ERF domain
SMARTSM003802.1E-33218281IPR001471AP2/ERF domain
CDDcd000187.39E-29218273No hitNo description
SuperFamilySSF541712.09E-20218274IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPDSDATDSS SDEEEKLQGE KSKRHKRTCI KEIIIENGKT RVISKKTSKE KKDIKMFQEN  60
AKKYKGVRQR RWGKWAAEIR DTKNKTRLWL GSFDTAEEAA LAYDKAAIEI RAMTPKEELQ  120
VKEGVKEPSV IALVEKSSNQ VGEISQVFPR LVRIHAPDHD TTDSSSDEEE KDEEEKSEGH  180
ERTCVKEIII ENGKTKDISK KKSKEKKASN LMQEDVNKYR GVRRRKWGKW AAEIRDTRKK  240
TRLWLGTFDT ALEAALAYDK AAIEIRGANA LTNILKPPPK KNNPIKINFI VPPLKRQKNS  300
RFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18632741371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064279.10.0ethylene-responsive transcription factor CRF2-like isoform X1
RefseqXP_015064286.10.0ethylene-responsive transcription factor CRF2-like isoform X1
RefseqXP_015064295.10.0ethylene-responsive transcription factor CRF2-like isoform X2
RefseqXP_015064302.10.0ethylene-responsive transcription factor CRF2-like isoform X2
SwissprotQ9SUE31e-27CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM1C2N11e-172M1C2N1_SOLTU; Uncharacterized protein
STRINGSolyc01g008890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.13e-13ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]