PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim00g217560.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 176aa    MW: 19896.5 Da    PI: 9.7428
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim00g217560.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.82.5e-3143140289
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa 70 
                          g+kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+d++sk ++WLl++ak+ i+el+ +                           
  Sopim00g217560.0.1  43 FGGKDRHSKVLTVKGLRDRRVRLSVPTALQVYDLQDKLGLDQPSKVVDWLLNEAKHDIDELPPLqirdqtglpltglrkeeeetmvV---- 129
                         689*************************************************************44444433333332222221110.... PP

                 TCP  71 seceaesssssasnsssg.....k 89 
                                    ++++  +     +
  Sopim00g217560.0.1 130 -----------SDED--RvkldvR 140
                         ...........1111..1223231 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.9945103IPR017887Transcription factor TCP subgroup
PfamPF036341.9E-3045149IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MISREVDPSD NNVIMIPKKS SLSSSSSWTR FKDPRIVRVS RAFGGKDRHS KVLTVKGLRD  60
RRVRLSVPTA LQVYDLQDKL GLDQPSKVVD WLLNEAKHDI DELPPLQIRD QTGLPLTGLR  120
KEEEETMVVS DEDRVKLDVR NLDLKGNSNS NNNKNSFSFG LYKDNHSSQS GIFIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1950104155Putative transcription factor PCF6
5zkt_B3e-1950104155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2468130.0AC246813.7 Solanum lycopersicum strain Heinz 1706 chromosome 2 clone slm-33h20 map 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004253504.31e-119transcription factor TCP17-like
TrEMBLA0A494GA561e-123A0A494GA56_SOLLC; Uncharacterized protein
STRINGSolyc00g217560.1.11e-124(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-42plastid transcription factor 1