PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g033380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 274aa    MW: 31037.6 Da    PI: 6.6347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g033380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-0899146455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ah+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen12g033380.1  99 AHSLAERVRREKIGERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 146
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.08E-993150No hitNo description
SuperFamilySSF474598.77E-1793162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.2595145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1695163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-599146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8101151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKESEFGDSR ENSSISQQIQ LEEVGIKCQN DANSKKGKSI PKRKAKEITP KNDNVSTQNN  60
ESSSKRIKSD EKNEENQKPQ EPLKDYIHVR ARRGQATDAH SLAERVRREK IGERMKFLQD  120
LVPGCNKVTG KAVMLDEIIN YVQSLQCQVE FLSMKLSNLN STTDFNAESL TSKNIFQSVG  180
SLHHNMNSSE SSVQEFPYGF QSQQGPNIQS FLTKETEFPF KINPHLDGFV EQTPQVPTFF  240
EDNDLHSFIH MGFSQIQAQN YPGNVSSAQM KAEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046PKRKAKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754513e-98HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060719.10.0transcription factor bHLH62-like
SwissprotQ9SRT24e-64BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A3Q7JDA40.0A0A3Q7JDA4_SOLLC; Uncharacterized protein
STRINGSolyc12g098620.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10572383
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]