PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g032210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 336aa MW: 36753.2 Da PI: 10.2885 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.7e-30 | 258 | 315 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYe+eH h+ Sopen12g032210.1 258 DEFSWRKYGQKPIKGSKYPRGYYKCSSLrGCPARKHVERAMDDPTMLIVTYEDEHCHN 315 99************************998***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.0E-13 | 208 | 254 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-30 | 246 | 316 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.393 | 251 | 317 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-25 | 253 | 316 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-35 | 256 | 316 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-25 | 258 | 314 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAVLSKMNES FAVEEAASAG LKSMEDLIRL VSHEPVQADC REMADFTVSK FKKVISILDR 60 TGHARFRRGP VQAQAPVQVR APVRGPVYPD SFTSLSLAPS LSFAPAKERL APSLSFAPAK 120 ERPVVQVQTA LTLDFSKLNV NRPIGNSSAF TAFTVKSKEV LMADPTPTNS SSFMSTITGE 180 ATVSNGKQVS SSMSLLPPQA VNFPTTGKRC REHEQSDAIS GSKSTGSGKC HCKKRKAKDR 240 KVIRIPAIST RVADIPGDEF SWRKYGQKPI KGSKYPRGYY KCSSLRGCPA RKHVERAMDD 300 PTMLIVTYED EHCHNPVAAM HGNSSQMVNF GLMEKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-19 | 244 | 315 | 2 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014501 | 0.0 | BT014501.1 Lycopersicon esculentum clone 133872F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015059989.1 | 0.0 | probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 8e-88 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A3Q7JEK4 | 0.0 | A0A3Q7JEK4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g096350.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3145 | 22 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.2 | 4e-91 | WRKY DNA-binding protein 11 |