PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g030120.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 1331aa MW: 150749 Da PI: 8.7751

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g030120.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	1094	1136	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N +++ Lr+++Pk + K++ +iL +++Y k+L Sopen12g030120.2 1094 MAERRRRKRLNGRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 1136 79*******************66......************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14244	6.2E-15	32	79	IPR029472	Gag-polypeptide of LTR copia-type
Pfam	PF03732	1.2E-7	115	170	IPR005162	Retrotransposon gag domain
Pfam	PF07727	1.0E-63	647	837	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	1.27E-29	669	816	No hit	No description
SuperFamily	SSF56672	1.27E-29	851	1033	No hit	No description
CDD	cd09272	1.18E-57	927	1037	No hit	No description
PROSITE profile	PS50888	14.405	1087	1136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-13	1092	1157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	1093	1142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-13	1094	1149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-7	1094	1136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF56672	7.12E-49	1199	1331	No hit	No description
Gene3D	G3DSA:3.10.10.10	5.0E-30	1216	1304	No hit	No description
CDD	cd01647	1.59E-41	1248	1331	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1331 aa Download sequence Send to blast
MVSEVIASSS SSVSADTLEG IEKNRNHPLY LHPSDTPGSV LTSIQLTGTE NYSLWSRSLM 60 INLRAKSKVG FVLGSCRKSD YKPELGEQWE KCNAFVLAWI MNTVSKELLS GIVYASDAAM 120 VWADLNERFN KVDGSRSYQL HREICTLHQG NLTVSAYFTK LRLLWDEFDA LVPPPTCDCD 180 KSKMYIDHLQ FLRLFAFLVG LNEVYSHARS QILMMNPLPS VNKAYVMITS DESQRMTAVN 240 RVGGDIHESM ALYSKKIDDS VMQYNKGKNV SGSYDPMAIL IGYPPDWKFK KKFGPGQDVQ 300 NAGKANHAYV DNQIKDEFES VQGLNNSSGS VEQAAKMGQN GHENQLTTQP TFTPNQYNKI 360 LQMINKEDSQ DYMANTAVTY KLLSVYNTKD KRKDNEDWII DSGATRHMTS KETKLDYSVS 420 VKDLDKQDLS NGKVKGIGKE RNGLYYLPSQ IPKRDAHDEQ NTLISNMVFN SEGFKWHSRL 480 GHPSMKPDLS HLRIIGYLCY ATKLVKDDKF STRADACVFM GYSSTKKGYV VYSLRHQKML 540 VSRDVVFKED IFPFARKEMD KDVPLFNPQH VTTDSQSMED VITVQEPAIN DDTLEFTETN 600 NPNNSEEIEL EDDLVPNIPV VAPVATRHSE RSRWKQWNKR LKHLRIMETF APVVKMVTVR 660 SIIALASIEV WPIFQMDVFN AFLQGDLYEE VYMELPKGFK GAEQNCVCKL VKSLYSLKQA 720 SRQWNAKLTE ALCKSGYTQS LLDYSLFTKR SDAGMVIVLV YVDDLLITGS DPVLVKATKQ 780 VLHSHFKMKD LGELKYFLGI EFCRSEKGIV MNQRKYALEL ISEAGLAGAQ PVFTPLECNV 840 KLTSVAYNTS DADPLFLDIS RYQRMIGKLL YLTNTRPDVA FAVQNLSQFM QQPKHSHWNA 900 ALRVIKYIKG SPGLGLLMSS HKDTKLTGFC DADWAACLST RRSVTGYLLK FGDSLISWKS 960 KKQNTVSRSS AEAEYRSLAT LTAEVVWVTS LFKELCVKLE SSTIIHCDSK AALQIAANPV 1020 FHERTKHIEI DCHFIHDFSS IYFDVGNFGD CKLERTQSTA SSAAIAPANF NIGACLDKKS 1080 KKKKVNGEPS KNLMAERRRR KRLNGRLSML RSIVPKISKM DRTSILGDTI DYTKELLEKI 1140 NNLQQEMELG SNQLSLMSIF KNEKPIEMFV RNSPKEMEQR GVTNAEEIKQ ALFKNAGYVG 1200 KCLPPDRDID FCIDVEPGTR PISIPPYRMA PAELKELKEQ LQDLLSKGFI RPSVSPWGAP 1260 VLFVKKKDGS MRMCIDYRQL NKVTIRNKYP IPRIDDLFDQ LQGASVFSKI DLRSGYHQLK 1320 VRAEDIPKTA F

Sequence ? help Back to Top

Protein Sequence Length: 1331 aa Download sequence Send to blast

MVSEVIASSS SSVSADTLEG IEKNRNHPLY LHPSDTPGSV LTSIQLTGTE NYSLWSRSLM  60
INLRAKSKVG FVLGSCRKSD YKPELGEQWE KCNAFVLAWI MNTVSKELLS GIVYASDAAM  120
VWADLNERFN KVDGSRSYQL HREICTLHQG NLTVSAYFTK LRLLWDEFDA LVPPPTCDCD  180
KSKMYIDHLQ FLRLFAFLVG LNEVYSHARS QILMMNPLPS VNKAYVMITS DESQRMTAVN  240
RVGGDIHESM ALYSKKIDDS VMQYNKGKNV SGSYDPMAIL IGYPPDWKFK KKFGPGQDVQ  300
NAGKANHAYV DNQIKDEFES VQGLNNSSGS VEQAAKMGQN GHENQLTTQP TFTPNQYNKI  360
LQMINKEDSQ DYMANTAVTY KLLSVYNTKD KRKDNEDWII DSGATRHMTS KETKLDYSVS  420
VKDLDKQDLS NGKVKGIGKE RNGLYYLPSQ IPKRDAHDEQ NTLISNMVFN SEGFKWHSRL  480
GHPSMKPDLS HLRIIGYLCY ATKLVKDDKF STRADACVFM GYSSTKKGYV VYSLRHQKML  540
VSRDVVFKED IFPFARKEMD KDVPLFNPQH VTTDSQSMED VITVQEPAIN DDTLEFTETN  600
NPNNSEEIEL EDDLVPNIPV VAPVATRHSE RSRWKQWNKR LKHLRIMETF APVVKMVTVR  660
SIIALASIEV WPIFQMDVFN AFLQGDLYEE VYMELPKGFK GAEQNCVCKL VKSLYSLKQA  720
SRQWNAKLTE ALCKSGYTQS LLDYSLFTKR SDAGMVIVLV YVDDLLITGS DPVLVKATKQ  780
VLHSHFKMKD LGELKYFLGI EFCRSEKGIV MNQRKYALEL ISEAGLAGAQ PVFTPLECNV  840
KLTSVAYNTS DADPLFLDIS RYQRMIGKLL YLTNTRPDVA FAVQNLSQFM QQPKHSHWNA  900
ALRVIKYIKG SPGLGLLMSS HKDTKLTGFC DADWAACLST RRSVTGYLLK FGDSLISWKS  960
KKQNTVSRSS AEAEYRSLAT LTAEVVWVTS LFKELCVKLE SSTIIHCDSK AALQIAANPV  1020
FHERTKHIEI DCHFIHDFSS IYFDVGNFGD CKLERTQSTA SSAAIAPANF NIGACLDKKS  1080
KKKKVNGEPS KNLMAERRRR KRLNGRLSML RSIVPKISKM DRTSILGDTI DYTKELLEKI  1140
NNLQQEMELG SNQLSLMSIF KNEKPIEMFV RNSPKEMEQR GVTNAEEIKQ ALFKNAGYVG  1200
KCLPPDRDID FCIDVEPGTR PISIPPYRMA PAELKELKEQ LQDLLSKGFI RPSVSPWGAP  1260
VLFVKKKDGS MRMCIDYRQL NKVTIRNKYP IPRIDDLFDQ LQGASVFSKI DLRSGYHQLK  1320
VRAEDIPKTA F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ol8_A	2e-26	1213	1331	55	173	Reverse transcriptase/ribonuclease H
4ol8_B	2e-26	1213	1331	55	173	Reverse transcriptase/ribonuclease H
4ol8_E	2e-26	1213	1331	55	173	Reverse transcriptase/ribonuclease H
4ol8_F	2e-26	1213	1331	55	173	Reverse transcriptase/ribonuclease H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	747	754	TKRSDAGM
2	1081	1101	KKKVNGEPSKNLMAERRRRKR
3	1095	1102	ERRRRKRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-30	beta HLH protein 93