PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g029840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23654.3 Da PI: 8.843 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.9 | 2e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++k rqv f+kRr+g+lKKA+E+SvLCd++vav+i+s++g+l+e+ss Sopen12g029840.1 9 KRIQDKNCRQVAFCKRRKGLLKKAKEISVLCDVDVAVVIISNRGRLHEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 33.6 | 1.6e-12 | 100 | 169 | 29 | 98 |
K-box 29 enLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 e Lq++ R+l + + L++ +L +Le++L+++l + Rs+K++llle+ + l +kek lqee+k L ++ Sopen12g029840.1 100 ELLQTTERQLEETNDDVLTVTDLIHLENELQTALIQLRSRKTHLLLESAKGLHEKEKLLQEEKKHLVDNI 169 67999999999999999************************************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.707 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-28 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.51E-31 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 1.0E-23 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.7E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-23 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-23 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.36 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.8E-9 | 100 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISVLCD VDVAVVIISN RGRLHEFSSN 60 NSLTEMLQRY KSHIEAEKEI STEIQVAEHS KYSGFITMGE LLQTTERQLE ETNDDVLTVT 120 DLIHLENELQ TALIQLRSRK THLLLESAKG LHEKEKLLQE EKKHLVDNIA SIKKNTKVNE 180 MSTDFADFPA PHMIFGQQKI TLNFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-15 | 1 | 84 | 1 | 84 | Myocyte-specific enhancer factor 2B |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 2e-98 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060177.1 | 1e-149 | protein MADS AFFECTING FLOWERING 5-like | ||||
TrEMBL | A0A0V0HME9 | 1e-133 | A0A0V0HME9_SOLCH; Uncharacterized protein | ||||
STRING | Solyc12g087830.1.1 | 1e-107 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65070.1 | 2e-30 | MIKC_MADS family protein |