PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g022680.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 837aa MW: 92430.9 Da PI: 6.5942

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g022680.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	16	74	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ Sopen12g022680.1 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP
2	START	175.6	3e-55	160	367	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++e+l+ + ++ g+++ Sopen12g022680.1 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGTIE 251 789*****************************************************.8888888888************9999 PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++l+a+++l+p Rdf+ +Ry+ +g++v++++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s v++v+h++l++++++++l Sopen12g022680.1 252 LLYMQLYAPTTLAPpRDFWLLRYTTVTDDGSFVVCERSLGNTQNGPSmpqVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMNLEAWSVPEVL 344 ******************************************9998899************************************ PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+++ ++kt++a+l++++ Sopen12g022680.1 345 RPLYESSAVLAQKTTMAALRQLR 367 *****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.742	11	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.51E-17	13	77	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-16	13	79	IPR001356	Homeobox domain
CDD	cd00086	8.77E-17	16	76	No hit	No description
Pfam	PF00046	1.1E-16	17	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-18	18	74	IPR009057	Homeodomain-like
CDD	cd14686	1.10E-5	68	107	No hit	No description
PROSITE profile	PS50848	26.882	150	365	IPR002913	START domain
CDD	cd08875	1.09E-76	154	369	No hit	No description
SuperFamily	SSF55961	4.4E-37	159	367	No hit	No description
SMART	SM00234	8.5E-41	159	369	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	8.6E-25	159	365	IPR023393	START-like domain
Pfam	PF01852	1.3E-52	160	367	IPR002913	START domain
Pfam	PF08670	2.5E-50	694	836	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MSMSCKDGKS IEDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ 60 IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT 120 QTTKLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN 240 MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYTTVTDD GSFVVCERSL GNTQNGPSMP 300 QVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTM 360 AALRQLRQLT LEVSQPNVTN WGRRPAALRA LSKRLNRGFN EALNGFSSEG WSMLDNDGMD 420 DVTILVNSSP DKLMGLNLSF SDGFTSLSNA VLCAKASMLL QSVTPAILLR FLREHRSEWV 480 DNNIDAYSAA AVKVGPCSLP GVRVSNFGGQ VILPLAHTVE HEELLEVIKL EGVFHSPEDV 540 IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDTP LLPSGFRIIP LDSAKEASSP 600 NRTLDLTSAL ETGPVGSKLA NDLKSTGGTS KSIMTIAFQF AFESHMQENV ASMARKYVRS 660 FISSVQRVAL ALSPSNFGSL GGLRLPLGTP EAHTLSQWIC QSYRRFLGVE LPKLRSEGSE 720 SLLDSLWHHS DAIICCSAKA LPVFTFANQG GLDMLETTLV ALQDISLEKI FDEHGRKNLC 780 SEFPQIMQQG FACLQGGICL SSMGRPVSYE KAVAWKVLNE EDTAHCIGFM FVNWSFV

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MSMSCKDGKS IEDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLV YENGYFRKQT  120
QTTKLASKDT SCESVVTSGQ HHLTPQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLDPTRVA EILKDRPSWY RDCRAVEVLN  240
MLPTANGGTI ELLYMQLYAP TTLAPPRDFW LLRYTTVTDD GSFVVCERSL GNTQNGPSMP  300
QVQNFVRAEM LPSGYLIRPC EGGGSIVHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTM  360
AALRQLRQLT LEVSQPNVTN WGRRPAALRA LSKRLNRGFN EALNGFSSEG WSMLDNDGMD  420
DVTILVNSSP DKLMGLNLSF SDGFTSLSNA VLCAKASMLL QSVTPAILLR FLREHRSEWV  480
DNNIDAYSAA AVKVGPCSLP GVRVSNFGGQ VILPLAHTVE HEELLEVIKL EGVFHSPEDV  540
IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDTP LLPSGFRIIP LDSAKEASSP  600
NRTLDLTSAL ETGPVGSKLA NDLKSTGGTS KSIMTIAFQF AFESHMQENV ASMARKYVRS  660
FISSVQRVAL ALSPSNFGSL GGLRLPLGTP EAHTLSQWIC QSYRRFLGVE LPKLRSEGSE  720
SLLDSLWHHS DAIICCSAKA LPVFTFANQG GLDMLETTLV ALQDISLEKI FDEHGRKNLC  780
SEFPQIMQQG FACLQGGICL SSMGRPVSYE KAVAWKVLNE EDTAHCIGFM FVNWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015061298.1	0.0	homeobox-leucine zipper protein ATHB-15-like
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A3Q7JAS2	0.0	A0A3Q7JAS2_SOLLC; Uncharacterized protein
STRING	Solyc12g044410.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]