PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g022660.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 201aa    MW: 22472.4 Da    PI: 4.8607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g022660.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-192878155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr ++ +g+Wv+eIr p++   + r++lg++ t+e+Aa+a++ a+++++g
  Sopen12g022660.1 28 PVYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYPTPEMAARAHDVAALSIKG 78
                      68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-132878IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-312987IPR001471AP2/ERF domain
PROSITE profilePS5103223.2482986IPR001471AP2/ERF domain
SMARTSM003801.5E-362992IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-212987IPR016177DNA-binding domain
PRINTSPR003674.1E-103041IPR001471AP2/ERF domain
CDDcd000185.70E-323086No hitNo description
PRINTSPR003674.1E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAELVQSSSI SVSKTEEKEK RTRDETYPVY RGVRMRSWGK WVSEIRQPRK KSRIWLGTYP  60
TPEMAARAHD VAALSIKGNS AILNFPQLVE SLPRPASISP RDVQAAAAKA AAMDELNSSV  120
SSTLRLSESM ETEDQLGQII ELPNLEGIFE SEEMKLSNSG DGWVYPPPFG EFDGELFGDF  180
FEHTAIGETL IPSKFDKMKW A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1730871573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060644.11e-146dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-56DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLG3K5141e-104G3K514_SOLTU; AP2 c4
STRINGPGSC0003DMT4000680401e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]