PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g018830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 447aa MW: 49464.8 Da PI: 7.9796 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.3 | 3.9e-42 | 93 | 168 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dl+++k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ Sopen12g018830.1 93 CQVQGCGKDLTSCKDYHKRHKVCEIHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 168 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.4E-33 | 89 | 154 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.556 | 90 | 167 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.67E-39 | 92 | 170 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-31 | 93 | 166 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MESWSYVSGG KGFVSEESVS VDDGITPCSW SQQGVKVGSQ IRDAFGGEDE SSSKHSSSSF 60 IDLKLGRGRF LDVKNFSLSS TKRNRAGGLT SFCQVQGCGK DLTSCKDYHK RHKVCEIHSK 120 TAKVIVNGIE QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTG LHSGRAGKHF 180 QPYSGTRFQG SSFVTSSFIC QDILGGSLLH QPKHDMHDWY KNVKVEHCSD YSPELTMPLT 240 NKHSQPRPLF TSYHTDKHCP ALHDEGTTTI TRSKNNESSN SYLNDIGGSD FVSRSLFHST 300 SIGSEVLNVM DSDYPFQGIS NSGCALSLLS SQSQDSSNYS SVVPPSAHHL ITPRSYNHYN 360 MTQTSECFPG ASPKGSTSTV STIYNLSEVI SAEGQLEHVL RNNCGSLQGS DYVNTKNLLS 420 CEDGTTIDLL QLSSQLHQVE HQRHSMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-29 | 92 | 166 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015059772.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_015059773.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_015059774.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | M1C4S2 | 0.0 | M1C4S2_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g038520.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 4e-45 | SBP family protein |