PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen12g015990.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 2260aa MW: 254630 Da PI: 8.6034

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen12g015990.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.1	1.9e-31	2066	2163	1	91
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s ++++ + s ++++s+ Sopen12g015990.1 2066 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPef 2156 589***********************************************************99944444333455555555554444434 PP TCP 89 ....kaa 91 + Sopen12g015990.1 2157 sqenRGV 2163 3322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03732	7.7E-17	204	300	IPR005162	Retrotransposon gag domain
SuperFamily	SSF57756	5.06E-7	389	425	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	8.2E-5	407	424	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	4.4E-4	408	424	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	10.823	409	424	IPR001878	Zinc finger, CCHC-type
Pfam	PF08284	2.4E-19	492	611	IPR013242	Retroviral aspartyl protease
CDD	cd00303	6.78E-15	511	592	No hit	No description
SuperFamily	SSF56672	6.56E-172	665	1094	No hit	No description
Gene3D	G3DSA:3.10.10.10	2.1E-35	690	831	No hit	No description
PROSITE profile	PS50878	13.508	722	901	IPR000477	Reverse transcriptase domain
CDD	cd01647	1.44E-92	725	901	No hit	No description
Pfam	PF00078	2.8E-30	741	900	IPR000477	Reverse transcriptase domain
Gene3D	G3DSA:3.30.70.270	2.5E-5	832	909	No hit	No description
CDD	cd09274	2.74E-58	995	1110	No hit	No description
Gene3D	G3DSA:3.30.420.10	1.3E-30	1273	1430	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	7.33E-43	1274	1433	IPR012337	Ribonuclease H-like domain
PROSITE profile	PS50994	20.331	1274	1437	IPR001584	Integrase, catalytic core
Pfam	PF00665	1.7E-12	1283	1394	IPR001584	Integrase, catalytic core
SuperFamily	SSF54160	1.32E-5	1546	1626	IPR016197	Chromo domain-like
Pfam	PF00385	7.4E-7	1583	1630	IPR023780	Chromo domain
Pfam	PF03634	1.3E-29	2067	2160	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	30.013	2069	2127	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2260 aa Download sequence Send to blast
MVRTRATTTS TPAPAGQGAS EPATGAVARG RAAARGRGRG RGRTSSRGRG QAPAPSGTRA 60 VTPPPTEEVV IEGEEGENEQ VQNEGLPPQP TPEMINQVLA YLSGLSDQGQ TPPVFSAPAP 120 QVPEVQQATA AAPRMDAPLE IGTFPRLTTG PIMTSDQHEL FSKFLKLKPP VFKGAESEDA 180 YDFLVDCHEL LHKMGIVERF GVEFVTYQFQ GNAKMWWRSH VECQPTEAPP MTWASFSSLF 240 MEKYIPRTLR DRRRDEFLSL EQGRMTVTAY EAKFRALSRY ATQLCFSSQE RIRRFVKGLR 300 SDLRISALQV AATAKSFQEV VDFVIEVEGV KPDDFTMAST SKRFRKGGEF NGSYSRGQGS 360 GGYSVRPIQS SLQTVVGGPP QTGQHFSEVG GYSQTSSFSQ RPMLDSRECY GCGETGHIRR 420 NCPKQSYRPP IARGRGGHGR GRYSGGRGGR GNGGHQNGRG DGQTGATTTP HGRGNGQTGD 480 RAHCYAFPGR SEAETSDVVI TGNLLVCDCM ASVLFDPGST FSYVSSSFAT GLNLHCELLD 540 MPIRVSTPVG ESVIVEKVYR SCLVTFMGSN TRVDLVILEM VDFDVILGMT WLSPNFAILD 600 CNAKTVTLAK PGTDPLVWEG NYTSTPVRII SFLRAKKMVS KGCLAFLAHL RDDTTQVPSI 660 ESVSVVREFL DVFPADLPGM PPDRDIDFCI DLEPGTRPIS IPPYRMAPAE LRELKAQLQE 720 LLGKGFIRPS ASPWGAPVLF VKKKDGSLRM CIDYRQLNKV TVKNRYPLPR IDDLFDQLQG 780 ACVFSKIDLR SGYHQLKIRA ADVPKTAFRT RYGHYEFLVM SFGLTNAPAA FMSLMNGILK 840 PYLDLFVIVF IDDILIYSKS KKEHEEHLRM VLEMLREKKL YAKFSKCEFW LDSVSFLGHV 900 VSKDGVMVDP SKIEVVKNWV RPTNVSEIRS FVGLASYYRR FVKGFSSIAS QLTNLTKQNV 960 PFVWSDECEE SFQKLKTLLT TAPILTLPVE GKNFIVYCDA SYSGLGAVLM QEKNVIAYAS 1020 RQLKVHERNY PTHDLELAAV VFALKQWRHY LYGVKCEVYT DHRSLQYVFT QKDLNLRQRR 1080 WMELLKDYDV TILYHPGKAN VVADALSRKA GSMGSLAHLQ ASRRPLAREV QTLANDLMRL 1140 EVNEKGGFLA SVEARSSFLD KIKGKQFNDE KLIRIRDKVL RGEAKEAIID EEGVLRIKGR 1200 VCVPRVDDLI NTILTEAHSS RYSIHPGATK MYRDLKQHFW WSRMKRDIVD FVAKCPNCQQ 1260 VKYEHQRPGG TLQRMPIPEW KWERIAMDFV VGLPKTLGKF DSIWVIVDRL TKSAHFIPVK 1320 VTYNAEKLAK LYISEIVRLH GVPLSIISDR GTQFTSKFWR TLHAELGTRL DLSTAFHPQT 1380 DGQSERTIQV LEDMLRACVI EFGGHWDNFL PLAEFSYNNS YHSSIDMAPF EALYGRRCRS 1440 PIGWFDAFEV RPWGTDLLRD SLEKVKSIQE KLLAAQSRQK EYADRKVRDL EFMEGEQVLL 1500 KVSPMKGVMR FGKRGKLSPR YIGPFEVLKR VGEVAYELAL PPGLSGVHPV FHVSMLKRYH 1560 GDGNYIIRWD SVLLDENLSY EEEPVAILDR EIRKLRSREI ASIKVQWKNR PVEEATWEKE 1620 ADMQERYPHL FTDSGTPFCP CFSSCDRSRT NDGTDRHRRD GPSQTLGKNL VSELCDGAAG 1680 RTVAGTTARH RLRNPRLGRI SVKKVSKNRN AEDCAKELTH KAIHDTSFHR RSIGVGRRLE 1740 VQASGSNSGN SYQLWSYGRT DSPSTDRRIV LANFGLDQRV VLVPEVEEKL KLNLTLSRMN 1800 DSHNLANVGD EINRQPPPPV DYQVIVENPE DKIRGYDVVE EVNGELVHNS WKAAEIPQKL 1860 TPIPRPPPPF MQRLVKNMMD GKYRGFITLL KQLSINVPLI EAPEQMFGYA MFMKDMVTTK 1920 RSISFDDDDQ MQHCSSIAIR SPVQNKEDPV GFGLPKAHCN APTDGRSNGE EADFVIIDCE 1980 FQVSDEEDGS EEEEEEEEEV FQENDIGNLQ SHYQNQQMPQ SLCKKPEKWA NFTVSEQELN 2040 KGTRRMKPKR AKTDVIEGHG GRIIRATGRK DRHSKVSTAK GPKDRRVRLS PNTAIQFYDV 2100 QDRLGYDRPS KAIDWLIKEA KAAIDALGEF PNNFHSTKLN PKKMQYSFDQ EQSPEFSQEN 2160 RGVPNSECGV QDKQQEVNYD IPNLFSSSDG LKIPFLSDLQ SYPHGHFLNF QSLQDDTILS 2220 SGNHHQGSFF TTTSVNHFPS VLSQIRCFLT GNPFSPVSSL

Sequence ? help Back to Top

Protein Sequence Length: 2260 aa Download sequence Send to blast

MVRTRATTTS TPAPAGQGAS EPATGAVARG RAAARGRGRG RGRTSSRGRG QAPAPSGTRA  60
VTPPPTEEVV IEGEEGENEQ VQNEGLPPQP TPEMINQVLA YLSGLSDQGQ TPPVFSAPAP  120
QVPEVQQATA AAPRMDAPLE IGTFPRLTTG PIMTSDQHEL FSKFLKLKPP VFKGAESEDA  180
YDFLVDCHEL LHKMGIVERF GVEFVTYQFQ GNAKMWWRSH VECQPTEAPP MTWASFSSLF  240
MEKYIPRTLR DRRRDEFLSL EQGRMTVTAY EAKFRALSRY ATQLCFSSQE RIRRFVKGLR  300
SDLRISALQV AATAKSFQEV VDFVIEVEGV KPDDFTMAST SKRFRKGGEF NGSYSRGQGS  360
GGYSVRPIQS SLQTVVGGPP QTGQHFSEVG GYSQTSSFSQ RPMLDSRECY GCGETGHIRR  420
NCPKQSYRPP IARGRGGHGR GRYSGGRGGR GNGGHQNGRG DGQTGATTTP HGRGNGQTGD  480
RAHCYAFPGR SEAETSDVVI TGNLLVCDCM ASVLFDPGST FSYVSSSFAT GLNLHCELLD  540
MPIRVSTPVG ESVIVEKVYR SCLVTFMGSN TRVDLVILEM VDFDVILGMT WLSPNFAILD  600
CNAKTVTLAK PGTDPLVWEG NYTSTPVRII SFLRAKKMVS KGCLAFLAHL RDDTTQVPSI  660
ESVSVVREFL DVFPADLPGM PPDRDIDFCI DLEPGTRPIS IPPYRMAPAE LRELKAQLQE  720
LLGKGFIRPS ASPWGAPVLF VKKKDGSLRM CIDYRQLNKV TVKNRYPLPR IDDLFDQLQG  780
ACVFSKIDLR SGYHQLKIRA ADVPKTAFRT RYGHYEFLVM SFGLTNAPAA FMSLMNGILK  840
PYLDLFVIVF IDDILIYSKS KKEHEEHLRM VLEMLREKKL YAKFSKCEFW LDSVSFLGHV  900
VSKDGVMVDP SKIEVVKNWV RPTNVSEIRS FVGLASYYRR FVKGFSSIAS QLTNLTKQNV  960
PFVWSDECEE SFQKLKTLLT TAPILTLPVE GKNFIVYCDA SYSGLGAVLM QEKNVIAYAS  1020
RQLKVHERNY PTHDLELAAV VFALKQWRHY LYGVKCEVYT DHRSLQYVFT QKDLNLRQRR  1080
WMELLKDYDV TILYHPGKAN VVADALSRKA GSMGSLAHLQ ASRRPLAREV QTLANDLMRL  1140
EVNEKGGFLA SVEARSSFLD KIKGKQFNDE KLIRIRDKVL RGEAKEAIID EEGVLRIKGR  1200
VCVPRVDDLI NTILTEAHSS RYSIHPGATK MYRDLKQHFW WSRMKRDIVD FVAKCPNCQQ  1260
VKYEHQRPGG TLQRMPIPEW KWERIAMDFV VGLPKTLGKF DSIWVIVDRL TKSAHFIPVK  1320
VTYNAEKLAK LYISEIVRLH GVPLSIISDR GTQFTSKFWR TLHAELGTRL DLSTAFHPQT  1380
DGQSERTIQV LEDMLRACVI EFGGHWDNFL PLAEFSYNNS YHSSIDMAPF EALYGRRCRS  1440
PIGWFDAFEV RPWGTDLLRD SLEKVKSIQE KLLAAQSRQK EYADRKVRDL EFMEGEQVLL  1500
KVSPMKGVMR FGKRGKLSPR YIGPFEVLKR VGEVAYELAL PPGLSGVHPV FHVSMLKRYH  1560
GDGNYIIRWD SVLLDENLSY EEEPVAILDR EIRKLRSREI ASIKVQWKNR PVEEATWEKE  1620
ADMQERYPHL FTDSGTPFCP CFSSCDRSRT NDGTDRHRRD GPSQTLGKNL VSELCDGAAG  1680
RTVAGTTARH RLRNPRLGRI SVKKVSKNRN AEDCAKELTH KAIHDTSFHR RSIGVGRRLE  1740
VQASGSNSGN SYQLWSYGRT DSPSTDRRIV LANFGLDQRV VLVPEVEEKL KLNLTLSRMN  1800
DSHNLANVGD EINRQPPPPV DYQVIVENPE DKIRGYDVVE EVNGELVHNS WKAAEIPQKL  1860
TPIPRPPPPF MQRLVKNMMD GKYRGFITLL KQLSINVPLI EAPEQMFGYA MFMKDMVTTK  1920
RSISFDDDDQ MQHCSSIAIR SPVQNKEDPV GFGLPKAHCN APTDGRSNGE EADFVIIDCE  1980
FQVSDEEDGS EEEEEEEEEV FQENDIGNLQ SHYQNQQMPQ SLCKKPEKWA NFTVSEQELN  2040
KGTRRMKPKR AKTDVIEGHG GRIIRATGRK DRHSKVSTAK GPKDRRVRLS PNTAIQFYDV  2100
QDRLGYDRPS KAIDWLIKEA KAAIDALGEF PNNFHSTKLN PKKMQYSFDQ EQSPEFSQEN  2160
RGVPNSECGV QDKQQEVNYD IPNLFSSSDG LKIPFLSDLQ SYPHGHFLNF QSLQDDTILS  2220
SGNHHQGSFF TTTSVNHFPS VLSQIRCFLT GNPFSPVSSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ol8_A	4e-89	665	1108	34	475	Reverse transcriptase/ribonuclease H
4ol8_B	4e-89	665	1108	34	475	Reverse transcriptase/ribonuclease H
4ol8_E	4e-89	665	1108	34	475	Reverse transcriptase/ribonuclease H
4ol8_F	4e-89	665	1108	34	475	Reverse transcriptase/ribonuclease H
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	39	RAAARGRGRG
2	2043	2049	RRMKPKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771432.1	0.0	LOW QUALITY PROTEIN: uncharacterized protein LOC114076513
TrEMBL	Q6F2D6	0.0	Q6F2D6_SOLDE; Putative polyprotein, identical
STRING	Solyc11g020560.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4112	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	3e-33	TCP domain protein 10