PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g015500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CAMTA | ||||||||
Protein Properties | Length: 160aa MW: 18770.1 Da PI: 9.369 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 173.9 | 2.3e-54 | 12 | 127 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ++e + rwl++ e++ iL+n++ +l+++++++p sgs++L+n++++ryfrkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+n++ Sopen12g015500.1 12 VQEgRFRWLRPAEVLFILQNHDDRQLAHQPPQKPASGSMFLFNKRVLRYFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEKNSN 104 667799*************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fqrr+yw+L+ ++e+ivlvhy++ Sopen12g015500.1 105 FQRRSYWILDPAYEHIVLVHYRD 127 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.511 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.8E-72 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-48 | 16 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MAESGYNTND LVQEGRFRWL RPAEVLFILQ NHDDRQLAHQ PPQKPASGSM FLFNKRVLRY 60 FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE KNSNFQRRSY WILDPAYEHI 120 VLVHYRDITE VSLQESNCTN IPFPDMTLAT NLTLFSSRQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN566047 | 0.0 | JN566047.1 Solanum lycopersicum calmodulin-binding transcription factor SR2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015061241.1 | 2e-90 | calmodulin-binding transcription activator 4-like isoform X3 | ||||
Swissprot | Q9FYG2 | 2e-58 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | H8ZRY2 | 2e-88 | H8ZRY2_SOLLC; Calmodulin-binding transcription factor SR2 | ||||
STRING | Solyc12g035520.1.1 | 9e-89 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 9e-61 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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