PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g010230.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 381aa    MW: 42780.4 Da    PI: 7.6821
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g010230.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-15551148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      + rW + Ede+l+++v+++G ++W  I++ ++  Rt+k+c++rw ++l
  Sopen12g010230.1  5 KRRWNPGEDERLKKLVEEHGAKNWLFISQSFP-SRTEKSCRERWCNHL 51
                      579*****************************.*************96 PP
2Myb_DNA-binding346.8e-1161101547
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       TteE++ + +a+ ++G+  W+ Ia+ ++ gRt   +k+ w++ 
  Sopen12g010230.1  61 TTEEEDTIFKAHSKFGNQ-WAMIASLLP-GRTNDFIKNQWNST 101
                       9***************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.095155IPR017930Myb domain
SuperFamilySSF466898.99E-28298IPR009057Homeodomain-like
SMARTSM007171.4E-14453IPR001005SANT/Myb domain
PfamPF002494.2E-14551IPR001005SANT/Myb domain
CDDcd001674.36E-14751No hitNo description
Gene3DG3DSA:1.10.10.601.0E-20758IPR009057Homeodomain-like
SMARTSM007172.7E-856104IPR001005SANT/Myb domain
PROSITE profilePS5129413.457106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-1759105IPR009057Homeodomain-like
PfamPF002492.5E-861100IPR001005SANT/Myb domain
CDDcd001678.06E-761102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGQIKRRWNP GEDERLKKLV EEHGAKNWLF ISQSFPSRTE KSCRERWCNH LNPQSDHHPL  60
TTEEEDTIFK AHSKFGNQWA MIASLLPGRT NDFIKNQWNS TLKRKHSSMS EDLTFENPQL  120
PLKRSFSVVI SINSRNPSES HLKFSRFPQL CHYPPTIPPC QDLHLSTYSP VIPDPLTSLS  180
SYGYDLSNLG ICRFPSLSLY PHIPPLVEFF PHSSFSPVIP NPLTIVSPYG SDLRKSNLAK  240
LPHLSLNSSI TQLGEIMPLS VVSPVLHGPS TTLSLSLPGS KSGENLNPIN RIEKVAELTP  300
VSTSQPNLSN FISQTSTTQN DNSGLTSMEI QLLSPNIWKV LQDMIRKEVK NYGSQLENER  360
DSMNTEATVD ATVNNIGVSK D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-3141053104MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-3141053104C-Myb DNA-Binding Domain
1msf_C4e-3141053104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060233.10.0transcription factor MYB44-like
TrEMBLK4DDK61e-156K4DDK6_SOLLC; Uncharacterized protein
STRINGSolyc12g019830.1.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1637334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-40myb domain protein r1