PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g008190.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 496aa    MW: 54013 Da    PI: 8.0714
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g008190.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-11137161226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C ++++t tCk+Gd+CkF H+
  Sopen12g008190.2 137 GEKDCAHYMQTRTCKFGDSCKFDHP 161
                       7889********************8 PP
2zf-CCCH34.92.6e-11186212127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C++f +t  Ck+GdrCkF+H++
  Sopen12g008190.2 186 PGEPDCPYFVKTKKCKFGDRCKFNHPK 212
                       5789*********************96 PP
3zf-CCCH36.96e-12239261527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        C f+++tGtCk+G++CkF+H++
  Sopen12g008190.2 239 QCAFYMKTGTCKFGATCKFHHPR 261
                       6********************96 PP
4zf-CCCH375.6e-12311337127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+f+++tG CkyG++C+++H++
  Sopen12g008190.2 311 PGEVDCPFYLKTGSCKYGGTCRYSHPE 337
                       57899********************96 PP
5zf-CCCH43.64.7e-14390415126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++++C+f+++tG+CkyG++CkF+H+
  Sopen12g008190.2 390 PGQVECDFYMKTGECKYGEKCKFHHP 415
                       5789*********************9 PP
6zf-CCCH437.5e-14447470427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +lC+++++tG CkyG++CkF H+p
  Sopen12g008190.2 447 VLCPYYMKTGMCKYGASCKFDHPP 470
                       79********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0013135162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742135163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5136162IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4141160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497185213IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6185212IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9187212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6190214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5191212IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896234262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6237262IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9238261IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5240261IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835310338IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9312337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5314337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4316337IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8389416IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666389417IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11391415IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6392417IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5395415IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8443470IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183443471IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10447470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6447470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6448468IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MANQLYGYNP SATAGIVAGN TRSMEDYLST DKTLLSSSTY FGSTAYSSYQ TDTYSPTASR  60
IPGYGPPGVD VTQPAAVTDS YFSSLKRSSS NALYHQALLG AHNTIGQAEA WFSANPLAKR  120
PRFESASNLS IYPQRPGEKD CAHYMQTRTC KFGDSCKFDH PIWVPEGGIP NWKEVPVSTE  180
SLPERPGEPD CPYFVKTKKC KFGDRCKFNH PKDNAAHLFQ GSVQNPGVSD LPERPSEQQC  240
AFYMKTGTCK FGATCKFHHP RDIQLPSPTQ ENGSVGKLGS ANYEMTEDVN LVKPLSVAAL  300
LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYSHPERNG VGIGPALVAS PATHWNIGMV  360
NPAASLLQNF DPRLTHTMLG VLPPVYPQRP GQVECDFYMK TGECKYGEKC KFHHPLDRSA  420
SAVSVKDVQQ PNVKLTLAGL PRREGAVLCP YYMKTGMCKY GASCKFDHPP PGEVLGMTSQ  480
GASLSVDGVG NVDVNE
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-151HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061691.10.0zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_027769445.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3Q7J5Y80.0A0A3Q7J5Y8_SOLLC; Uncharacterized protein
STRINGSolyc12g017410.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)