PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g008190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 494aa    MW: 53737.7 Da    PI: 8.0714
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g008190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-11137161226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C ++++t tCk+Gd+CkF H+
  Sopen12g008190.1 137 GEKDCAHYMQTRTCKFGDSCKFDHP 161
                       7889********************8 PP
2zf-CCCH34.92.6e-11186212127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C++f +t  Ck+GdrCkF+H++
  Sopen12g008190.1 186 PGEPDCPYFVKTKKCKFGDRCKFNHPK 212
                       5789*********************96 PP
3zf-CCCH36.96e-12237259527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        C f+++tGtCk+G++CkF+H++
  Sopen12g008190.1 237 QCAFYMKTGTCKFGATCKFHHPR 259
                       6********************96 PP
4zf-CCCH375.6e-12309335127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+f+++tG CkyG++C+++H++
  Sopen12g008190.1 309 PGEVDCPFYLKTGSCKYGGTCRYSHPE 335
                       57899********************96 PP
5zf-CCCH43.64.7e-14388413126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++++C+f+++tG+CkyG++CkF+H+
  Sopen12g008190.1 388 PGQVECDFYMKTGECKYGEKCKFHHP 413
                       5789*********************9 PP
6zf-CCCH437.5e-14445468427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +lC+++++tG CkyG++CkF H+p
  Sopen12g008190.1 445 VLCPYYMKTGMCKYGASCKFDHPP 468
                       79********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.742135163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-5136162IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4141160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497185213IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6185212IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-9187212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-6190214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5191212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896232260IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4232259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6235260IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9236259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5238259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.835308336IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7308335IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5312335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4314335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666387415IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-8387414IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-11389413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6390415IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5393413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183441469IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8441468IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10445468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6445468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6446466IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MANQLYGYNP SATAGIVAGN TRSMEDYLST DKTLLSSSTY FGSTAYSSYQ TDTYSPTASR  60
IPGYGPPGVD VTQPAAVTDS YFSSLKRSSS NALYHQALLG AHNTIGQAEA WFSANPLAKR  120
PRFESASNLS IYPQRPGEKD CAHYMQTRTC KFGDSCKFDH PIWVPEGGIP NWKEVPVSTE  180
SLPERPGEPD CPYFVKTKKC KFGDRCKFNH PKDNAAHLGS VQNPGVSDLP ERPSEQQCAF  240
YMKTGTCKFG ATCKFHHPRD IQLPSPTQEN GSVGKLGSAN YEMTEDVNLV KPLSVAALLH  300
NSKGLPIRPG EVDCPFYLKT GSCKYGGTCR YSHPERNGVG IGPALVASPA THWNIGMVNP  360
AASLLQNFDP RLTHTMLGVL PPVYPQRPGQ VECDFYMKTG ECKYGEKCKF HHPLDRSASA  420
VSVKDVQQPN VKLTLAGLPR REGAVLCPYY MKTGMCKYGA SCKFDHPPPG EVLGMTSQGA  480
SLSVDGVGNV DVNE
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-151HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061692.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3Q7J5Y80.0A0A3Q7J5Y8_SOLLC; Uncharacterized protein
STRINGSolyc12g017410.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)