PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g007960.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 219aa    MW: 25165.8 Da    PI: 6.5742
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g007960.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF421.2e-1321481340
                      HHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
            SRF-TF 13 fskRrngilKKAeELSvLCdaevaviif 40
                      + +R + ++KKAeELS+LCd+eva+iif
  Sopen12g007960.1 21 LDRRETSLFKKAEELSILCDVEVAIIIF 48
                      5567888********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.918148IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-7160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-161095IPR002100Transcription factor, MADS-box
PfamPF003191.4E-121551IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MATKRLRNTR NYSENVRNSI LDRRETSLFK KAEELSILCD VEVAIIIFRP GKIQPVTWKS  60
ASLAQDVLTR YLSFIEFKRL NKLVTHEDYL QKKIDKKEEQ IRKLEKMNEA KEMEILFNQL  120
VEGKSINELD AREMKGLLKV FAAKMAKLDE KKKELNQTPN PPSNKENITL SASPMEESFN  180
DPWFIQTIAT LGDGSGMEFT PKEGNGVNVE DDGHSKDLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061001.11e-160agamous-like MADS-box protein AGL90
TrEMBLA0A3Q7J5S91e-150A0A3Q7J5S9_SOLLC; Uncharacterized protein
STRINGSolyc12g016170.1.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-15AGAMOUS-like 96