PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen12g007920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24893.4 Da PI: 4.9714 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.4 | 1.5e-12 | 20 | 48 | 12 | 40 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviif 40 + kR + ++K AeELS+LCd+eva+iif Sopen12g007920.1 20 ILDKRVTSLFKQAEELSILCDVEVAIIIF 48 478*************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.362 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0031 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-12 | 14 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.18E-15 | 14 | 94 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MATKRLRDTP NYSENVRNSI LDKRVTSLFK QAEELSILCD VEVAIIIFRP GKIQPITWKS 60 PSLAQDVLTR YLSFIEFKRL SKLVTHEDYL QKKVDKKEEQ ISKLEKMNEA KEMEILFNQL 120 VEGKSIDELD AREMKGLLKL FAAKMAKLDE RKKELNQAPN PPSNKENIIV SASPMEESFN 180 DPWLIQAIAT LGDGSGVESE QKEGNGVNVE DDGHSKDLD |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060998.1 | 1e-159 | agamous-like MADS-box protein AGL90 | ||||
TrEMBL | M1DXN5 | 1e-141 | M1DXN5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400096078 | 1e-141 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA378 | 20 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06500.1 | 6e-16 | AGAMOUS-like 96 |