PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g006550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Nin-like
Protein Properties Length: 295aa    MW: 32478.3 Da    PI: 9.8507
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g006550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK65.39.5e-213482351
            RWP-RK  3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51
                      k++s++d+sk Fslp+ dAA +Lgvc++vLK+iC ++G+ RWP+Rk++s
  Sopen12g006550.1 34 KSVSFDDVSKLFSLPLSDAAESLGVCASVLKKICYENGLVRWPYRKVSS 82
                      789*******************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.35712103IPR003035RWP-RK domain
PfamPF020422.7E-193682IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSNLQGSAPS SNPNPIQNPN PNPNPYLKPI TDPKSVSFDD VSKLFSLPLS DAAESLGVCA  60
SVLKKICYEN GLVRWPYRKV SSGKSIEDIK KEALREKQER SLEFPKAPGE KNGSLASSAI  120
SSFSGSPLPN KSISSTMEMP RAGAFSQQQG TRNFQSGSSP HFRISNLTKG TSVYDEFKYG  180
FPSDGLSTAT YRWWGNKSPD GNQDSKLNDD NAKNSTEQAE NVAEKTECQT SVDSTGTTLL  240
TDVRKRAAKE GKETLRLGVH RRRSVKMLDS TKRKILHQVF KSYFHVHGDM SSMES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059560.10.0uncharacterized protein LOC107005475
TrEMBLA0A0V0HW320.0A0A0V0HW32_SOLCH; Uncharacterized protein
STRINGPGSC0003DMT4000202960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107441921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.22e-10Nin-like family protein