PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g006250.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 323aa    MW: 35855.6 Da    PI: 9.5182
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g006250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.61e-1557147186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++  +++Liea  ++  +l+rg+l++++W+ev++++       ++  r+ +qCk++++ l+k+yk +k++ ++ +s+ + ++p+f++l+
  Sopen12g006250.1  57 CWSEAATHTLIEAWGSLYVELKRGNLRQKHWQEVANAVnklhgNTKKQFRTDIQCKNRIDTLKKKYKIEKARVSQSHSRYVPQWPFFNSLD 147
                       7*************************************999986777779***********************99999**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2455148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSDDDLVASP SSNNNSPSPS PSPPPSSVKN ELATLPPPPM IPPASTRPAA FPAREDCWSE  60
AATHTLIEAW GSLYVELKRG NLRQKHWQEV ANAVNKLHGN TKKQFRTDIQ CKNRIDTLKK  120
KYKIEKARVS QSHSRYVPQW PFFNSLDVLI GDNFKPSPLP VTVAPRRKTP PLLPPPTSAV  180
PVGPRSKRPA AVMEDVVSRR NFSAMAAAAA AAASEDSDEE EESETSSPAT FTASAPSRRK  240
ESGALTEGCS RLAEAIGRFA EIYERVEDAK QRQMVELEKQ RMQFAKDLEI QRMKLIMESQ  300
VQLEKLKRAK NSSQADGYLY KEC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251804.10.0trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A3Q7J4B20.0A0A3Q7J4B2_SOLLC; Uncharacterized protein
STRINGSolyc12g010890.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-66sequence-specific DNA binding transcription factors