PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g003760.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 327aa    MW: 36299.3 Da    PI: 9.9261
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g003760.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.4e-19153186134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Sopen12g003760.1 153 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 186
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-17147198IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-12150187No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15151186IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.532151183IPR000679Zinc finger, GATA-type
CDDcd002021.08E-13152184No hitNo description
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
PfamPF003206.8E-17153186IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MIPNYTNSSS SSSFPFELNN EVHHDYLSHN NNNNMSLVSP YNNNYQFASS STNSSCQNFF  60
NISTTTNIQD QSGYDYQFHQ PQHHHEVDNF ASRSSGSHDH VEKKNKGLKL TLWKKGGQKV  120
KNLKVEDQKQ QIIETDYSSN SSSNNNIIPI RVCSDCNTTK TPLWRSGPKG PKSLCNACGI  180
RQRKARRAAA AAAAASTTPN NGTNFTSTET TTTTTMKIKV QQQKHKVTKV NANHVVPFKK  240
RCKFLSSTTT PAPESGLVPT PAPRVGSSSS SSFYNNNNND VQQKKKICFE DFFMNLSNNL  300
AIHRVFPQDE KEAAILLMAL SSGLVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015059328.10.0putative GATA transcription factor 22
TrEMBLM0ZH971e-129M0ZH97_SOLTU; Uncharacterized protein
STRINGSolyc12g008830.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.14e-19GATA family protein