PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g003310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 296aa    MW: 32650.2 Da    PI: 4.6778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g003310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-1784132355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  Sopen12g003310.1  84 YVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 132
                       99***998.**********854...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1183132IPR001471AP2/ERF domain
SMARTSM003807.7E-3483146IPR001471AP2/ERF domain
PROSITE profilePS5103221.91883140IPR001471AP2/ERF domain
PRINTSPR003671.3E-88495IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-3084141IPR001471AP2/ERF domain
CDDcd000189.72E-3184140No hitNo description
SuperFamilySSF541719.81E-2084140IPR016177DNA-binding domain
PRINTSPR003671.3E-8106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MIIMSTEQPN CSESTESSCN SSSSSSPSSP SSVLLQPLPQ INSKNRLKRC RGEEEVEEED  60
VVVNNPNPKK MNKNNNGSTS VVSYVGVRMR AWGKWVSEIR EPKKKSRIWL GTFATPEMAA  120
RAHDVAAMSI KGTSAILNFP QFSHLLPRPV TCSPRDIQNA AVKAAHMDHL NPKFSILPET  180
STATMTSSSS SLSLVSGVTS SSSSSQDDEE SRPSPLELVP EATGQLSEIV ELPKLGSSYE  240
LVESTQSLFE SDEWWDNNYG NCEYFFGQEN YISSNMEFTG LENVVSTSFE SFLWQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16841411573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060645.10.0dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-46DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLM0ZHP21e-157M0ZHP2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000009861e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.19e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]