PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen12g003310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 32650.2 Da PI: 4.6778 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 4.7e-17 | 84 | 132 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+ +++g Sopen12g003310.1 84 YVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 132 99***998.**********854...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-11 | 83 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-34 | 83 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.918 | 83 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-8 | 84 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-30 | 84 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.72E-31 | 84 | 140 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-20 | 84 | 140 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-8 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MIIMSTEQPN CSESTESSCN SSSSSSPSSP SSVLLQPLPQ INSKNRLKRC RGEEEVEEED 60 VVVNNPNPKK MNKNNNGSTS VVSYVGVRMR AWGKWVSEIR EPKKKSRIWL GTFATPEMAA 120 RAHDVAAMSI KGTSAILNFP QFSHLLPRPV TCSPRDIQNA AVKAAHMDHL NPKFSILPET 180 STATMTSSSS SLSLVSGVTS SSSSSQDDEE SRPSPLELVP EATGQLSEIV ELPKLGSSYE 240 LVESTQSLFE SDEWWDNNYG NCEYFFGQEN YISSNMEFTG LENVVSTSFE SFLWQH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 84 | 141 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060645.1 | 0.0 | dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 3e-46 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M0ZHP2 | 1e-157 | M0ZHP2_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000986 | 1e-157 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 9e-46 | ERF family protein |
Publications ? help Back to Top | |||
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