PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g002300.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 880aa    MW: 97388.5 Da    PI: 6.3727
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g002300.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23129230199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  Sopen12g002300.2 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPVQ--ELIGKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 217
                       99****************************996555544..8999*********************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Sopen12g002300.2 218 NENNQLLLGIRRA 230
                       888889****997 PP
2Auxin_resp113.42.1e-37255338183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F++++nPra++seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+W+s+k
  Sopen12g002300.2 255 AAHAAATNSRFTIFFNPRACPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSIRRYMGTITGIGDLDPVRWPNSHWQSVK 338
                       79*********************************9789*****************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.76E-47114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-42123244IPR015300DNA-binding pseudobarrel domain
CDDcd100177.02E-21128229No hitNo description
PROSITE profilePS5086312.816129231IPR003340B3 DNA binding domain
PfamPF023626.3E-22129230IPR003340B3 DNA binding domain
SMARTSM010192.6E-24129231IPR003340B3 DNA binding domain
PfamPF065071.6E-32255337IPR010525Auxin response factor
PfamPF023091.4E-6736828IPR033389AUX/IAA domain
PROSITE profilePS5174522.163746830IPR000270PB1 domain
SuperFamilySSF542771.9E-7747821No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MKVSTSGFNS QPEEAGEKKS LNSELWHACA GPLVSLPHVG TRVVYFPQGH SEQVAASTNK  60
EINGHIPSYP GLPPQLICQL HNVTMDADVE TDEVYAQMTL QPLTPQEQKD VCLLPAELGT  120
LSKQPSNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPVQELI GKDLHGNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVIFIWNEN NQLLLGIRRA NRPQTVLPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFFN PRACPSEFVI PLAKYAKAVY HTRVSVGMRF  300
RMLFETEESS IRRYMGTITG IGDLDPVRWP NSHWQSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FSLRLKRPWP PALPSFPGLS NGDMTMNSQL PWLHGGMGDQ GIQSLNFQGF  420
GVTPFMQPRF DASMLGLQPD ILQAMAALDS SKLANQPLMQ FQHIPSTSAS SIQSQLLHPS  480
NLQHTFLQGL PENQLISQAQ MLQQQLQCHQ SYNTQQQQLQ RQQLYHDQQL QEPHQVQRQD  540
QQQTKAQLCS ATQSQLSHLQ VLGSTGSQQT FSDLVGNHIN TSNNSSTMQS LLSSFSRNGA  600
STSLNMPETN SLVSPSSSSK RIALESQIPS QAPYMVTQAE VLTVPNTKVS DFSTLFSPNP  660
GRQVLDYQSV AVSQNNALFG VNGMSNLKGN SPENGSLPVP YATSTFTSTV GSEYPVNSDM  720
TTSSCVDESG VLQSSENVDQ ANSLTETFVK VYKSESFGRS LDISKFSSYN ELRSELARMF  780
GLEGLLEDPE RSGWQLVFVD RENDVLLLGD DPWHEFVNSV WYIKILSPLE VQQMGKQGLD  840
LPSAGKTQRI TSNGNGCDDF MNRNHSCNIM NGIPLGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601335942388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3600360.0GQ360036.2 Solanum lycopersicum auxin response factor 6 (ARF6) mRNA, complete cds.
GenBankHM5946840.0HM594684.1 Solanum lycopersicum auxin response factor 6 (ARF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061224.10.0auxin response factor 6-like isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLE0AD210.0E0AD21_SOLLC; Auxin response factor
STRINGPGSC0003DMT4000741690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]