PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen12g002300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 879aa    MW: 97317.4 Da    PI: 6.3727
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen12g002300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.81e-23128229199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  Sopen12g002300.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPVQ--ELIGKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--W 216
                       99****************************996555544..8999*********************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Sopen12g002300.1 217 NENNQLLLGIRRA 229
                       888889****997 PP
2Auxin_resp113.42.1e-37254337183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F++++nPra++seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+W+s+k
  Sopen12g002300.1 254 AAHAAATNSRFTIFFNPRACPSEFVIPLAKYAKAVYhTRVSVGMRFRMLFETEESSIRRYMGTITGIGDLDPVRWPNSHWQSVK 337
                       79*********************************9789*****************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.76E-47113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.7E-42122243IPR015300DNA-binding pseudobarrel domain
CDDcd100177.00E-21127228No hitNo description
PfamPF023626.3E-22128229IPR003340B3 DNA binding domain
SMARTSM010192.6E-24128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.816128230IPR003340B3 DNA binding domain
PfamPF065071.6E-32254336IPR010525Auxin response factor
PfamPF023091.4E-6735827IPR033389AUX/IAA domain
PROSITE profilePS5174522.163745829IPR000270PB1 domain
SuperFamilySSF542771.9E-7746820No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MKVSTSGFNS QPEEGEKKSL NSELWHACAG PLVSLPHVGT RVVYFPQGHS EQVAASTNKE  60
INGHIPSYPG LPPQLICQLH NVTMDADVET DEVYAQMTLQ PLTPQEQKDV CLLPAELGTL  120
SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QQPPVQELIG KDLHGNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNENN QLLLGIRRAN RPQTVLPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFFNP RACPSEFVIP LAKYAKAVYH TRVSVGMRFR  300
MLFETEESSI RRYMGTITGI GDLDPVRWPN SHWQSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF SLRLKRPWPP ALPSFPGLSN GDMTMNSQLP WLHGGMGDQG IQSLNFQGFG  420
VTPFMQPRFD ASMLGLQPDI LQAMAALDSS KLANQPLMQF QHIPSTSASS IQSQLLHPSN  480
LQHTFLQGLP ENQLISQAQM LQQQLQCHQS YNTQQQQLQR QQLYHDQQLQ EPHQVQRQDQ  540
QQTKAQLCSA TQSQLSHLQV LGSTGSQQTF SDLVGNHINT SNNSSTMQSL LSSFSRNGAS  600
TSLNMPETNS LVSPSSSSKR IALESQIPSQ APYMVTQAEV LTVPNTKVSD FSTLFSPNPG  660
RQVLDYQSVA VSQNNALFGV NGMSNLKGNS PENGSLPVPY ATSTFTSTVG SEYPVNSDMT  720
TSSCVDESGV LQSSENVDQA NSLTETFVKV YKSESFGRSL DISKFSSYNE LRSELARMFG  780
LEGLLEDPER SGWQLVFVDR ENDVLLLGDD PWHEFVNSVW YIKILSPLEV QQMGKQGLDL  840
PSAGKTQRIT SNGNGCDDFM NRNHSCNIMN GIPLGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3600360.0GQ360036.2 Solanum lycopersicum auxin response factor 6 (ARF6) mRNA, complete cds.
GenBankHM5946840.0HM594684.1 Solanum lycopersicum auxin response factor 6 (ARF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061225.10.0auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLE0AD210.0E0AD21_SOLLC; Auxin response factor
STRINGPGSC0003DMT4000741690.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]